View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_4 (Length: 423)
Name: NF20288_low_4
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_4 |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 36518338 - 36518168
Alignment:
| Q |
19 |
aactaactaccccaaaaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaagtttggattattaaccaatcgc |
118 |
Q |
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| T |
36518338 |
aactaactaccccaaaaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaagtttggattattaaccaattgc |
36518239 |
T |
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| Q |
119 |
aaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttgg |
189 |
Q |
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| T |
36518238 |
aaaaacgaattctcaacaaatgcattaaaccatgtctccaccaatccatctcaactccaaataaaatttgg |
36518168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 134 - 329
Target Start/End: Original strand, 47649145 - 47649340
Alignment:
| Q |
134 |
acaaatgcattaaaccatgtctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttc |
233 |
Q |
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| T |
47649145 |
acaaatgcatcaagtcgtgtctccacgaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaatgtcaagaaaaattacttacaatttc |
47649244 |
T |
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| Q |
234 |
tctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccgataccctataaaaatattcaaaat |
329 |
Q |
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| T |
47649245 |
tctgaagtggtgttattatccttgtgagcacgctcggacattatattaagtgcactacaaaattgtccaccgataccctatagaaatattcaaaat |
47649340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 411
Target Start/End: Original strand, 47649437 - 47649529
Alignment:
| Q |
328 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctt |
411 |
Q |
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| T |
47649437 |
atttatatacttacttagaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttctcctagttgcctt |
47649529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 206 - 329
Target Start/End: Original strand, 91407 - 91528
Alignment:
| Q |
206 |
aaagtaaagaaaaattacttacaatttctctcaagtcgtgttattatccttatgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
305 |
Q |
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| T |
91407 |
aaagtcaagaaaaattgcttacaatttctgg--agtcatgttattatccttgtgaacaagttcatacattatattaagtgcactagaaaattgtccaccg |
91504 |
T |
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| Q |
306 |
ataccctataaaaatattcaaaat |
329 |
Q |
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| T |
91505 |
ataccctataaaaatattcaaaat |
91528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 91601 - 91695
Alignment:
| Q |
328 |
atttatatacttacttggaaattcatcatttgactaaatat---------tttttcctcaacttgtttctccatcttttctcctagttgcctttg |
413 |
Q |
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| T |
91601 |
atttatatacttactttgaaattcatcatttgactaaacatatttgccattttttcctcaacttgtttctccatcttttcccctagttgcctttg |
91695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 30753272 - 30753404
Alignment:
| Q |
153 |
tctccaccaatccatctcaactcgaaataaaatttggacaaaattgtatgctaaaagtaaagaaaaattacttacaatttctctcaagtcgtgttattat |
252 |
Q |
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| T |
30753272 |
tctccatcaagccatctcaattcaaaataaaatttagacaaaattgtattctaaaagtcaagaaaaattacttccaatttctctgaagtcgtgttattat |
30753371 |
T |
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| Q |
253 |
ccttatgaacaagttcatacattatattaagtg |
285 |
Q |
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| T |
30753372 |
ccttatgaacaagttcagacattatcttaagtg |
30753404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 10727828 - 10727891
Alignment:
| Q |
34 |
aaacagaaccactgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaag |
97 |
Q |
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| T |
10727828 |
aaacagaaccgctgcacaaacagtagccgaaccctcacaccagaagacagaaaacaccagtaag |
10727891 |
T |
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