View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_5 (Length: 415)
Name: NF20288_low_5
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 38697303 - 38697710
Alignment:
| Q |
1 |
agatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaagcaagaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38697303 |
agatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccactaactttgcgagcactgtctcgagctgcaaaagcaagaat |
38697402 |
T |
|
| Q |
101 |
gtctgcacaggacaccgttttgggacattcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatgg |
200 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697403 |
gtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatgg |
38697502 |
T |
|
| Q |
201 |
tctctctcagatcgaatacctggtatggaatctaataaaacagaaccaccacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697503 |
tctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcag |
38697602 |
T |
|
| Q |
301 |
cgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697603 |
tgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgt |
38697702 |
T |
|
| Q |
401 |
tgatgatg |
408 |
Q |
| |
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|||||||| |
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|
| T |
38697703 |
tgatgatg |
38697710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 38628978 - 38628571
Alignment:
| Q |
1 |
agatagacactcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaagcaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38628978 |
agatagacactcgaccatctctgcgtcctgatggtactgagtagtctattctgccgccactaactttgcgagcactgtctcgagctgcaaaagcaagaat |
38628879 |
T |
|
| Q |
101 |
gtctgcacaggacaccgttttgggacattcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatgg |
200 |
Q |
| |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628878 |
gtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgtttgcaggatgg |
38628779 |
T |
|
| Q |
201 |
tctctctcagatcgaatacctggtatggaatctaataaaacagaaccaccacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcag |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628778 |
tctctctcagattgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaatcaaaccagcag |
38628679 |
T |
|
| Q |
301 |
cgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatacttcaaagatgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38628678 |
cgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctctacggatgaacatgttgtcttgtagaaaccatacttcaaagatgt |
38628579 |
T |
|
| Q |
401 |
tgatgatg |
408 |
Q |
| |
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||||||| |
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|
| T |
38628578 |
cgatgatg |
38628571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 369
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
261 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
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| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
|
| Q |
361 |
atggacatg |
369 |
Q |
| |
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||||||||| |
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|
| T |
14256301 |
atggacatg |
14256293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 30652194 - 30652335
Alignment:
| Q |
11 |
tcgaccatctctgcgtcctgttggtactgagtagtctattctgtcgccactaactttgcgagcaccgtctcgagctgcaaaagcaagaacgtctgcacag |
110 |
Q |
| |
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|||||||||||| || ||| || ||||||||||||||| | |||||||||||||||| || |||||||||| |||| ||||| ||||||||| |
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| T |
30652194 |
tcgaccatctctatgtactgatgctactgagtagtctatgtcgctaccactaactttgcgagtactgtctcgagcttgaaaaa-aagaatgtctgcacac |
30652292 |
T |
|
| Q |
111 |
gacaccgttttgggacattcagcctctatttgtgccttagctt |
153 |
Q |
| |
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| || ||||| |||||| | ||||||||||||| |||||||| |
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| T |
30652293 |
aagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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