View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_6 (Length: 385)
Name: NF20288_low_6
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 373
Target Start/End: Original strand, 11042252 - 11042599
Alignment:
| Q |
23 |
acatctgttgatctatgttgcgagagttatgttcaattagtgtaaaggcatcaatacttgtaaagaaatatcataatttcagaataatggctgtcaaacc |
122 |
Q |
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| T |
11042252 |
acatctgttgatctatgttgcgagagttatgttcaattagtgtaaaggcatcaatacttgtaaagaaatatcataatttcaaaataatggctgtcaaacc |
11042351 |
T |
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| Q |
123 |
tgcgtatacataatttctcatgttatataatcatcacttttattcttggtgcgccataatatgaagttcggtcacaagataagtatagtttaatcatcaa |
222 |
Q |
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| T |
11042352 |
tgcgtatgcataatttctcatgttatataatcatcacttttattcttggtgtgccataatataaagttcggtcacgagataagtatagctta---atcaa |
11042448 |
T |
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| Q |
223 |
gaattgttccatccataaatcgaactaaacacatacatgtagctaaccttgtccatttactgttgtcaatttactgtaatatttaagaacatgcattgag |
322 |
Q |
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| T |
11042449 |
gaattgttccatccataaatcgaactaaacacatacatgtagctaaccttgtccatttactgttgtcaatttactgtaatatttaagaacatgcattgag |
11042548 |
T |
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| Q |
323 |
agctgccactgcagcaacataatcaattcaaataaaactaaatttctcctt |
373 |
Q |
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| T |
11042549 |
agctgccactgcagcaacataatcaattcaaataaaactaaatttctcctt |
11042599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11539790 - 11539721
Alignment:
| Q |
6 |
gtggctgttttcatctcacatctgttgatctatgttgcgagagttatgttcaattagtgtaaaggcatca |
75 |
Q |
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| T |
11539790 |
gtggctgttttcatctcacatctgttgatctatgttgcgagagttatgttcctttagtgtaaagacatca |
11539721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 11539556 - 11539522
Alignment:
| Q |
136 |
tttctcatgttatataatcatcacttttattcttg |
170 |
Q |
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| T |
11539556 |
tttctcatgttatataatcatcacttttgttcttg |
11539522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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