View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_7 (Length: 382)
Name: NF20288_low_7
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 36702783 - 36702409
Alignment:
| Q |
1 |
atgtattaagccatttaattaagtacctttaattgtttttgaagatctttaatatactctacagccaagtctaacatttctgatgtgcaagtttgctgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702783 |
atgtattaagccatttaattaagtacctttaattgtttttgaagatctttaatatactctacagccaagtctaacatttctgatgtgcaagtttgctgcc |
36702684 |
T |
|
| Q |
101 |
aataattaaacaatgtttaactttctaaacacaaaaacataattgtctcaaaagggggaaaaatcaaaaactgtgtgatgatgattctgaccttatcaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36702683 |
aataattaaacaatgtttaactttctaaacacaaaaacataattgtctcaaaagggggaaaaatcaacaactgtgtgatgatgattctgaccttatcaat |
36702584 |
T |
|
| Q |
201 |
gtttggaacaatctcttgcaattttctcattcgttcacttatccgagttcttcttaccctttcggcaaggcttctaggatgtgttgcaaagcctctcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36702583 |
gtttggaacaatctcttgcaattttctcattcgttcacttatccgagttcttcttaccctttcggcaaggcttctaggatgtgttgcaaagcctctcttt |
36702484 |
T |
|
| Q |
301 |
gctctgatactgctaggaacagaatctggaaactgaagcaaattctccacaacaaacatttctgatgatattctt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
36702483 |
gctctgatactgctaggaacagaatctggaaactgaagcaatttctccacaacaaacatttctgatgattttctt |
36702409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 159 - 375
Target Start/End: Original strand, 18241042 - 18241258
Alignment:
| Q |
159 |
aaaaatcaaaaactgtgtgatgatgattctgaccttatcaatgtttggaacaatctcttgcaattttctcattcgttcacttatccgagttcttcttacc |
258 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
18241042 |
aaaaatcaacaattgtgtgatgatgattctgaccttatcaatgtttaaaacgacctcttgcaattttctcattcgttcatttatccgagttcttctcacc |
18241141 |
T |
|
| Q |
259 |
ctttcggcaaggcttctaggatgtgttgcaaagcctctctttgctctgatactgctaggaacagaatctggaaactgaagcaaattctccacaacaaaca |
358 |
Q |
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|| | ||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
18241142 |
ctcttggcaaggcttctaggatgtcttgcaaagcctctctttgctctaatactgcttgtaacagaatctggaaactgaagaagattctccacaacaaaca |
18241241 |
T |
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| Q |
359 |
tttctgatgatattctt |
375 |
Q |
| |
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||||||||||| ||||| |
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| T |
18241242 |
tttctgatgattttctt |
18241258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 21324444 - 21324365
Alignment:
| Q |
23 |
gtacctttaattgtttttgaagatctttaatatactctacagccaagtctaacatttctgatgtgcaagtttgctgccaa |
102 |
Q |
| |
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||||||| |||||||||||||||| |||||| || || ||||||||||| ||||| ||||||||| ||||||||||||| |
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| T |
21324444 |
gtaccttgaattgtttttgaagatttttaatgtaatcaacagccaagtccaacatgtctgatgtgttagtttgctgccaa |
21324365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 21324256 - 21324190
Alignment:
| Q |
190 |
accttatcaatgtttggaacaatctcttgcaattttctcattcgttcacttatccgagttcttctta |
256 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||| ||||||| |||||| ||| ||||||||||| |
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| T |
21324256 |
accttatccatgtttggaacaagctcttgcaatttcctcattctttcactgatcttagttcttctta |
21324190 |
T |
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