View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_8 (Length: 377)
Name: NF20288_low_8
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 38697166 - 38696820
Alignment:
| Q |
14 |
ttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatccttctatggaccctgactttgctaggttgttgagatccaagtgtccg |
113 |
Q |
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| T |
38697166 |
ttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatccttctatggaccctgactttgctaggttgttgagatccaagtgtccg |
38697067 |
T |
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| Q |
114 |
ccaccacagtcacaacaatcacagtcacagatacagaacctagactcaacagtggcgtttgatggttccacgcctaatgatttggacaacatgtactata |
213 |
Q |
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| T |
38697066 |
ccaccacagtcacaacaatcacagtcacagatacagaacctagactcaacagtggcgtttgatggttccacgcctaatgatttggacaacatgtactata |
38696967 |
T |
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| Q |
214 |
agaggttgaagaataaccgtggtttattaacttcggatcaaatattgcttaatagtggcttaactaagagaatggtgttaaaaaatgccagacatgctgc |
313 |
Q |
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| T |
38696966 |
agaggttgaagaataaccgtggtttattaacttcggatcaaatattggttaatagtggcttaactaagagaatggtgttaaaaaatgccagacatgctgc |
38696867 |
T |
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| Q |
314 |
aatctggaatgtgaagtttgccaaggcaatggtgcatatgggtaact |
360 |
Q |
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| T |
38696866 |
aatctggaatgtgaagtttgccaaggcaatggtacatatgggtaact |
38696820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 38629115 - 38629436
Alignment:
| Q |
14 |
ttcttcattctcaaaacgattatactctttcaatgcaacttttcctcaagatccttctatggaccctgactttgctaggttgttgagatccaagtgtccg |
113 |
Q |
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| T |
38629115 |
ttcttcattctcaaaacgattatactctttcaatttaacttttcctcaagatccttctatggaccctaactttgctaggttgttaaaatctaagtgtcca |
38629214 |
T |
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| Q |
114 |
ccaccacagtcacaacaatcacagtcacagatacagaacctagactcaacagtggcgtttgatggttccacgcctaatgatttggacaacatgtactata |
213 |
Q |
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| T |
38629215 |
ccaccacagtca---------------------cagagcataaacccaactgtggtgcttgatggtagcacgcctaatgatttggacaacatgtactata |
38629293 |
T |
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| Q |
214 |
agaggttgaagaataaccgtggtttattaacttcggatcaaatattgcttaatagtggcttaactaagagaatggtgttaaaaaatgccagacatgctgc |
313 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
38629294 |
agaggttgaagaataatcgtggtttattaacttcggatcaaacattgcttaatagtggcttaactaggagaatggtgttaaaaaatgctagacatgctgc |
38629393 |
T |
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| Q |
314 |
aatctggaatgtgaagtttgccaaggcaatggtgcatatgggt |
356 |
Q |
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| T |
38629394 |
aatctggaatgtgaagtttgccaaagccatggtgcatatgggt |
38629436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 20516587 - 20516684
Alignment:
| Q |
174 |
gatggttccacgcctaatgatttggacaacatgtactataagaggttgaagaat----aaccgtggtttattaacttcggatcaaatattgcttaata |
267 |
Q |
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| T |
20516587 |
gatggttccacgcctattgatttggacaacatgtactataagaggttgaagaaagaacaaccatggtttattaacttcagatcaaacgttgcttaata |
20516684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 8234650 - 8234727
Alignment:
| Q |
281 |
gagaatggtgttaaaaaatgccagacatgctgcaat--ctggaatgtgaagtttgccaaggcaatggtgcatatgggt |
356 |
Q |
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| T |
8234650 |
gagaatggtgttaaaaactttcagacatgctgcaatttctggaaagtaaagtttgccaaagctatggtgcatatgggt |
8234727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 13404543 - 13404466
Alignment:
| Q |
281 |
gagaatggtgttaaaaaatgccagacatgctgcaatct--ggaatgtgaagtttgccaaggcaatggtgcatatgggt |
356 |
Q |
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||||||||||||||||| | ||||| |||||||||| |||| || ||||||||||| || ||||||||||||||| |
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| T |
13404543 |
gagaatggtgttaaaaactttcagactagctgcaatctctggaaagtaaagtttgccaaagctatggtgcatatgggt |
13404466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 36981688 - 36981611
Alignment:
| Q |
281 |
gagaatggtgttaaaaaatgccagacatgctgcaa--tctggaatgtgaagtttgccaaggcaatggtgcatatgggt |
356 |
Q |
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||||||||||||||||||| |||||| ||| ||| ||||||| || ||||||||||| || | ||||||||||||| |
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| T |
36981688 |
gagaatggtgttaaaaaatttcagacacgctacaatctctggaaagtaaagtttgccaaagccaaggtgcatatgggt |
36981611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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