View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20288_low_9 (Length: 370)
Name: NF20288_low_9
Description: NF20288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20288_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 5475320 - 5474979
Alignment:
| Q |
12 |
atgaacaaaaagttaaaatatatcagagagtatcacatgtatatcttacaatataaagtaaatctccccgacaaagatttttctttttatagtatcactt |
111 |
Q |
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| T |
5475320 |
atgaacaaaaagttaaaatatatcagagagtatcacatgtatatcttacaatataaagcaaatctccccgacaaagatttttctttttatagtatcactt |
5475221 |
T |
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| Q |
112 |
taagcttagtcgtaccttgttattattacattatgatgattttataagatttatagttgccgtgattatgaatattgaatatcaattgcatgcattacat |
211 |
Q |
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| T |
5475220 |
taagcttagtcgtaccttgttattattacattatgatgattttataagatttattgttgccgtgattatgaatattgaatatcaattgcatgcattacat |
5475121 |
T |
|
| Q |
212 |
ttatttccaaaatgttaataatttgcatgattcaatgcttccaaatttagatcttatatatgcatatatctatatgatagctagctccttattttgttga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5475120 |
ttatttccaaaatgttaataatttgcatgattcaatgcttccaaatttagatcttatatatgcatatatctatatgatagctagctccttattttgttga |
5475021 |
T |
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| Q |
312 |
aggcttgctctagagagtagacacgtctggtatgaagtggct |
353 |
Q |
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| T |
5475020 |
aggcttgctctagagagtagacacgtctggtatgaagtggct |
5474979 |
T |
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