View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20289_high_1 (Length: 853)

Name: NF20289_high_1
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20289_high_1
NF20289_high_1
[»] chr3 (9 HSPs)
chr3 (15-432)||(11610503-11610909)
chr3 (510-853)||(11611528-11611888)
chr3 (427-483)||(11611157-11611213)
chr3 (90-141)||(11252045-11252096)
chr3 (91-140)||(34185052-34185101)
chr3 (92-144)||(20503536-20503588)
chr3 (90-145)||(40052381-40052436)
chr3 (90-140)||(27505320-27505370)
chr3 (90-140)||(55401144-55401194)
[»] chr4 (11 HSPs)
chr4 (92-140)||(11596297-11596345)
chr4 (90-147)||(24343582-24343639)
chr4 (61-142)||(37203292-37203373)
chr4 (92-147)||(715538-715593)
chr4 (92-147)||(752864-752919)
chr4 (90-140)||(23292926-23292976)
chr4 (91-140)||(18513175-18513224)
chr4 (92-140)||(12708213-12708261)
chr4 (90-141)||(18966578-18966629)
chr4 (94-140)||(12895214-12895260)
chr4 (90-135)||(3712458-3712503)
[»] chr1 (14 HSPs)
chr1 (61-140)||(2218267-2218347)
chr1 (96-140)||(30359440-30359484)
chr1 (96-140)||(31694639-31694683)
chr1 (92-139)||(5927281-5927328)
chr1 (90-140)||(6427544-6427594)
chr1 (90-140)||(46940748-46940798)
chr1 (91-140)||(29144320-29144369)
chr1 (92-140)||(47989579-47989627)
chr1 (91-138)||(42359391-42359438)
chr1 (90-140)||(9828124-9828174)
chr1 (106-140)||(16812641-16812675)
chr1 (90-140)||(37598900-37598950)
chr1 (90-140)||(40917829-40917879)
chr1 (19-85)||(46348390-46348456)
[»] chr7 (11 HSPs)
chr7 (68-133)||(18215144-18215210)
chr7 (90-140)||(30813866-30813916)
chr7 (90-140)||(5409771-5409821)
chr7 (90-140)||(29763129-29763179)
chr7 (92-140)||(1401094-1401142)
chr7 (90-145)||(9778574-9778629)
chr7 (90-140)||(598277-598327)
chr7 (90-140)||(43027404-43027454)
chr7 (91-140)||(6490786-6490835)
chr7 (90-135)||(13770765-13770810)
chr7 (94-143)||(24339726-24339775)
[»] chr2 (10 HSPs)
chr2 (90-150)||(35056948-35057008)
chr2 (90-140)||(37419823-37419873)
chr2 (92-141)||(11223792-11223841)
chr2 (90-142)||(26769591-26769643)
chr2 (90-141)||(37559046-37559097)
chr2 (92-138)||(2438661-2438707)
chr2 (94-140)||(15907851-15907897)
chr2 (90-140)||(38117099-38117149)
chr2 (106-140)||(44635578-44635612)
chr2 (15-85)||(20473304-20473374)
[»] scaffold0793 (1 HSPs)
scaffold0793 (92-147)||(4814-4869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (90-144)||(241674-241728)
[»] chr8 (4 HSPs)
chr8 (90-140)||(22197671-22197721)
chr8 (90-147)||(29510226-29510283)
chr8 (15-86)||(22197748-22197819)
chr8 (91-140)||(22652057-22652106)
[»] chr5 (5 HSPs)
chr5 (90-140)||(35017112-35017162)
chr5 (92-141)||(19820327-19820376)
chr5 (90-147)||(32766865-32766922)
chr5 (90-140)||(14873591-14873641)
chr5 (95-145)||(15086552-15086602)
[»] chr6 (6 HSPs)
chr6 (91-140)||(7248439-7248488)
chr6 (92-140)||(32511606-32511654)
chr6 (104-143)||(5569832-5569871)
chr6 (106-140)||(426478-426512)
chr6 (88-137)||(9025448-9025497)
chr6 (90-143)||(34595203-34595256)
[»] scaffold0053 (1 HSPs)
scaffold0053 (90-142)||(8867-8919)
[»] scaffold0086 (1 HSPs)
scaffold0086 (90-140)||(3008-3058)
[»] scaffold0652 (1 HSPs)
scaffold0652 (90-139)||(403-452)
[»] scaffold0450 (1 HSPs)
scaffold0450 (90-143)||(8561-8614)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 11610503 - 11610909
Alignment:
Q  15 cacagacactgacatgccaacaccgctaataatttnnnnnnntcatataatttagtgtagttacaagtgtcaagtcgtgtccgacatcggaacacgccaa 114  Q
    |||||| ||||||| ||||||||||||||||||||       ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |    
T  11610503 cacagatactgacacgccaacaccgctaataatttaaaaaaatcacataattcagtgtagttacaagtgtcaagtcgtgtccgacatcgggacacgccta 11610602  T
Q  115 atctgaggagtgtccgtgcttcatagattattagtatactactttgcagtacgatgaagcaccgacacaaacatatacatctaatagagacacttagaga 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||    
T  11610603 atctgaggagtgtccgtgcttcatagattattagtttactactttgcagtacaatgaagcaccgacacaaacatagacatctaacagagacacttagaga 11610702  T
Q  215 cacgtagacattagttataattaagttgaagtgttcgagcgtaactatatgtgttgatgttctatcgatgatactgacacatgtcagacaccagagagat 314  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||           ||||| ||||||||    
T  11610703 cacgtagacattagttataattaagttgaagtgtttgagcgtaactatatgtgttgatgttctatcgatgacact-----------gacactagagagat 11610791  T
Q  315 cttcaatatgatatctcgatgatagagatcgatattcaatcctccttgagcttatgcagagctatataggatctgtcaagtagtaattcaaatattcaaa 414  Q
    |||||||||||||| || |||||  ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11610792 cttcaatatgatatttccatgatccagatcaatatttaatcctccttgagcttatgcagagctatataggatctgtcaagtagtacttcaaatattcaaa 11610891  T
Q  415 tttaataatttattttta 432  Q
    ||||||||||||||||||    
T  11610892 tttaataatttattttta 11610909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 510 - 853
Target Start/End: Original strand, 11611528 - 11611888
Alignment:
Q  510 atagaaccctgatctggcagaaaaatctatgttagaggaatcttcactaactataggcacctccgaaagcatgaattcgtatagaggtttatgactaacc 609  Q
    ||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11611528 atagaacccagatctgcaagaaaaatctatgttagaggaatcatcactaactataggcacctccgaaagcatgaattcgtatagaggtttctgactaacc 11611627  T
Q  610 tcttctgctagactcaatcagagttgtttattgtataccgcaa----------tatttttccaaa----tcaaatatgtttagacaattgttaaggattc 695  Q
    ||||||||||||||||||||||||||||||||| | | | |||           |||||| || |     | ||||| ||||  ||| |||||||||| |    
T  11611628 tcttctgctagactcaatcagagttgtttattgaagatcacaaattgaaactcgatttttgcacaagctaccaatatctttatccaaatgttaaggatac 11611727  T
Q  696 actcttgatgaattgtgaaaatgaaaatgaatgcactctt----tatagttagactaacttgttgatatgtttgttttgtgttgctattagtcttcctgg 791  Q
    || ||||||||||||||||| |||||||||||||| | ||    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||    
T  11611728 acacttgatgaattgtgaaactgaaaatgaatgcattttttatatatagttagactaacttgttaatatgtttgttttgtgttgc-attagtcttcccgg 11611826  T
Q  792 agacaacggattcgatccattgggacttgcagaagatccagagaacttgaaatggtttgttc 853  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  11611827 agacaacggattcgatccattgggactagccgaggatccagagaacttgaaatggtttgttc 11611888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 427 - 483
Target Start/End: Original strand, 11611157 - 11611213
Alignment:
Q  427 tttttagaaaaatagacattaaatgtggttctgaactttgtttgatattactgtata 483  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  11611157 tttttaaaaaaatagacattaaatatggttctgaagtttgtttgatattactgtata 11611213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 11252045 - 11252096
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcataga 141  Q
    |||||||| |||||||||||||| |||| |||||||||| ||||||||||||    
T  11252045 cgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcataga 11252096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 20503536 - 20503588
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagatta 144  Q
    |||| |||| ||| ||||||| |||| ||||||||||||||||||||||||||    
T  20503536 tgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagatta 20503588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 40052381 - 40052436
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattat 145  Q
    ||||||||||| ||| ||||||| |||| ||||||||| |||||||||||| ||||    
T  40052381 cgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcataggttat 40052436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 27505320 - 27505370
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||    
T  27505320 cgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 55401144 - 55401194
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||  ||||||| |||| ||||||||||||||||||||||    
T  55401144 cgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 11596345 - 11596297
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 24343582 - 24343639
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||||||||| ||||    
T  24343582 cgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatagatcatta 24343639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 37203292 - 37203373
Alignment:
Q  61 ataatttagtgtagttacaagtgtcaagtcgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagat 142  Q
    ||||||||||||| ||||||||||   |||| |||||||| ||| ||||| | |||| ||| ||||||||||||||||||||    
T  37203292 ataatttagtgtaattacaagtgtagtgtcgggtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatagat 37203373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 715593 - 715538
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    |||||||||  || ||||||| |||| |||||||||||||||||||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagattatta 715538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 752919 - 752864
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    |||||||||  || ||||||| |||| |||||||||||||||||||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagattatta 752864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 23292976 - 23292926
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 18513224 - 18513175
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| | | ||||||| |||||||||||||||||||||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 12708213 - 12708261
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||| |||||||||||||||| |||| |||||| |||||||||||||||    
T  12708213 tgtcggacatcggaacacgcctaatccgaggagcgtccgtgcttcatag 12708261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 18966578 - 18966629
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcataga 141  Q
    ||||||||||| ||| | ||||| ||||| ||||||||||||||||||||||    
T  18966578 cgtgtccgacaacgggatacgcctaatctaaggagtgtccgtgcttcataga 18966629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 12895260 - 12895214
Alignment:
Q  94 tccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||||||| |||| ||||||||| ||||||||||||    
T  12895260 tccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 3712503 - 3712458
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgctt 135  Q
    ||||||||||| ||| ||||| | ||||||||||||||||||||||    
T  3712503 cgtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 2218267 - 2218347
Alignment:
Q  61 ataatttagtgtagttacaagtgtcaa-gtcgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||||| |||||||||||   |||||||||||||   | ||||||| |||||||||||||||||||||||||||    
T  2218267 ataatttagtgtaattacaagtgtcggtgtcgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 30359440 - 30359484
Alignment:
Q  96 cgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  30359440 cgacaacgggacacgccaaatctgaggagtgtccgtgcttcatag 30359484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 31694683 - 31694639
Alignment:
Q  96 cgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  31694683 cgacaccggaacacgcctaatctgaggagtgtccgtgcttcatag 31694639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 5927328 - 5927281
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcata 139  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  5927328 tgtccgacatcgaaacatgcctaatctgaggagtgtccgtgcttcata 5927281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 6427544 - 6427594
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  6427544 cgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 46940798 - 46940748
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||||||    
T  46940798 cgtgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 29144369 - 29144320
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| ||||||||||| |||| || |||||||||||||||||||    
T  29144369 gtgtccgacaccggaacacgcctaatccgaagagtgtccgtgcttcatag 29144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 47989579 - 47989627
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||| |||||||| ||||||| |||| ||||||||||||||||||||||    
T  47989579 tgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 42359438 - 42359391
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcat 138  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  42359438 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 9828124 - 9828174
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||| | |||| ||||||||||||||||||||||    
T  9828124 cgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 16812641 - 16812675
Alignment:
Q  106 acacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  16812641 acacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 37598900 - 37598950
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||||  || ||||||| |||| ||||||||||||||||||||||    
T  37598900 cgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 40917829 - 40917879
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| ||||| ||||||||||||||||    
T  40917829 cgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 46348456 - 46348390
Alignment:
Q  19 gacactgacatgccaacaccgctaataatttnnnnnnntcatataatttagtgtagttacaagtgtc 85  Q
    |||||||||| ||| |||| |||||||||||       ||||||||||||||||| |||||||||||    
T  46348456 gacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtc 46348390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 18215210 - 18215144
Alignment:
Q  68 agtgtagttacaagtgtcaa-gtcgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgc 133  Q
    ||||||||||||||||||   ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  18215210 agtgtagttacaagtgtcggtgtcgtgtccgacaccgggacacgcctaatctgaggagtgtccgtgc 18215144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 30813866 - 30813916
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  30813866 cgtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 5409821 - 5409771
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  5409821 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 29763179 - 29763129
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||||| | ||||||| |||| ||||||||||||||||||||||    
T  29763179 cgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 1401094 - 1401142
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||||| |||| || |||||||||||||||| ||||||||||    
T  1401094 tgtccgacatcgggacacacctaatctgaggagtgtccatgcttcatag 1401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 9778574 - 9778629
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattat 145  Q
    ||||||||||| ||| ||||||| ||||  ||||||||||||||||||||| ||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcataggttat 9778629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 598277 - 598327
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| ||| ||||||||||||||||||    
T  598277 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 43027454 - 43027404
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| || |||||||||||||||||||    
T  43027454 cgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 6490786 - 6490835
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| ||| ||||||  |||| ||||||||||||||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 13770765 - 13770810
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgctt 135  Q
    ||||||||||| ||||||||||| |||| || ||||||||||||||    
T  13770765 cgtgtccgacaccggaacacgcctaatccgaagagtgtccgtgctt 13770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 24339726 - 24339775
Alignment:
Q  94 tccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagatt 143  Q
    ||||||| ||| ||||||| |||| |||||||| ||||||||||||||||    
T  24339726 tccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagatt 24339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 35056948 - 35057008
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattattagta 150  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||||||| |||| ||||    
T  35056948 cgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatagcttataagta 35057008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 37419823 - 37419873
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 11223841 - 11223792
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcataga 141  Q
    |||| |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  11223841 tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 26769591 - 26769643
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagat 142  Q
    |||||||||||  || ||||||| |||| ||||||||||||||||||||||||    
T  26769591 cgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 37559046 - 37559097
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcataga 141  Q
    ||||||||||| ||| ||||||  |||| |||||||||||||||||||||||    
T  37559046 cgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcataga 37559097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 2438707 - 2438661
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcat 138  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  2438707 tgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 15907897 - 15907851
Alignment:
Q  94 tccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  15907897 tccgacaccgggacacgcccaatctgatgagtgtccgtgcttcatag 15907851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 38117149 - 38117099
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| ||| ||||||| |||| |||| |||||||||||||||||    
T  38117149 cgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 44635578 - 44635612
Alignment:
Q  106 acacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  44635578 acacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 20473304 - 20473374
Alignment:
Q  15 cacagacactgacatgccaacaccgctaataatttnnnnnnntcatataatttagtgtagttacaagtgtc 85  Q
    |||||||||||||||||| ||||  ||||||||||       |||||||||| |||||| |||||||||||    
T  20473304 cacagacactgacatgccgacacaactaataatttaaaaaactcatataattcagtgtaattacaagtgtc 20473374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 4869 - 4814
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    |||||||||  || ||||||| |||| |||||||||||||||||||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagattatta 4814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 241674 - 241728
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagatta 144  Q
    ||||||||||| ||| ||||||| |||| ||| ||||||||||||||||||||||    
T  241674 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagatta 241728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 22197721 - 22197671
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||| ||||    
T  22197721 cgtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttatag 22197671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 29510283 - 29510226
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    ||||||||||| ||| |||| || |||| |||||||||||||||||||||| ||||||    
T  29510283 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggttatta 29510226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 22197819 - 22197748
Alignment:
Q  15 cacagacactgacatgccaacaccgctaataatttnnnnnnntcatataatttagtgtagttacaagtgtca 86  Q
    |||||||||| ||| |||||||| |||||||||||       ||| ||||||||||||| ||||||||||||    
T  22197819 cacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaattacaagtgtca 22197748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 22652057 - 22652106
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| ||| ||||| | |||| ||||||||||||||||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 35017112 - 35017162
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| ||||||| ||||||| |||| ||||||||||||||||||||||    
T  35017112 cgtgtccaacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 19820376 - 19820327
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcataga 141  Q
    ||||||||| ||| ||||||| |||| |||||||||||||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 32766922 - 32766865
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattatta 147  Q
    ||||||||||| | | | ||| | ||||||||||||||||||||||||||||||||||    
T  32766922 cgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatagattatta 32766865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 14873591 - 14873641
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| ||| ||| ||||||| |||| ||||||||||||||||||||||    
T  14873591 cgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 15086552 - 15086602
Alignment:
Q  95 ccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagattat 145  Q
    |||||||||||||||||| |||| ||||||||||  |||||||||| ||||    
T  15086552 ccgacatcggaacacgcctaatccgaggagtgtctttgcttcataggttat 15086602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 7248439 - 7248488
Alignment:
Q  91 gtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||||||||| ||| ||||| |||||| ||||||||||||||||||||||    
T  7248439 gtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcatag 7248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 32511654 - 32511606
Alignment:
Q  92 tgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    |||| ||||||||| |||||| |||| ||||||||||||||||||||||    
T  32511654 tgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcatag 32511606  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 143
Target Start/End: Original strand, 5569832 - 5569871
Alignment:
Q  104 gaacacgccaaatctgaggagtgtccgtgcttcatagatt 143  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  5569832 gaacacgcctaatctgaggagtgtccgtgcttcatcgatt 5569871  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 426512 - 426478
Alignment:
Q  106 acacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||||| |||||||||||||||||||||||||||    
T  426512 acacgcctaatctgaggagtgtccgtgcttcatag 426478  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 9025497 - 9025448
Alignment:
Q  88 gtcgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttca 137  Q
    ||||||||||||| ||| ||||||| |||| ||| |||||||||||||||    
T  9025497 gtcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 34595203 - 34595256
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagatt 143  Q
    |||||| |||| ||| |||| || |||| |||||||||||||||||||||||||    
T  34595203 cgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagatt 34595256  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 8867 - 8919
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagat 142  Q
    ||||||||||| ||  ||||||| |||||||||||| ||||||||||||||||    
T  8867 cgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatagat 8919  T

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Target: scaffold0086 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 3008 - 3058
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatag 140  Q
    ||||| ||||| ||||||||||| |||| |||||||||||||||| |||||    
T  3008 cgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

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Target: scaffold0652 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 452 - 403
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcata 139  Q
    ||||||||||| ||| |||| || |||| |||||||||||||||||||||    
T  452 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0450 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 8614 - 8561
Alignment:
Q  90 cgtgtccgacatcggaacacgccaaatctgaggagtgtccgtgcttcatagatt 143  Q
    |||||||||||  || ||||||| |||  |||||||||||||||||||||||||    
T  8614 cgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagatt 8561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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