View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20289_high_3 (Length: 540)
Name: NF20289_high_3
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20289_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 33910068 - 33909565
Alignment:
| Q |
1 |
agattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaacactgttttgccttaactcacaaggtccgcaacatgt |
100 |
Q |
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| T |
33910068 |
agattgaaaaattataaaagcacttgcaaatgtgctccaacggtcttcctctaagagcattaac----------------tcacaaggtccacaacatgt |
33909985 |
T |
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| Q |
101 |
atttaatcaaaatcaaaagtttatcaatgccaccaaactaacaagtaacatatcgtaatattgctttaaagggttcaatcatgtgcaatt-ttttatgtc |
199 |
Q |
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| T |
33909984 |
atttaatcaaaatcaaaagtttatcaatggcaccaaactaacaagtaacatatcgtaatattgctttaaagggtccaatcatgtgcaatttttttatgtg |
33909885 |
T |
|
| Q |
200 |
aatttgatgaaaagttgttcagcaaaacaattaattctgagttgcca--atcatgtacaatcttttggacaatatatttgtagggttgggaatatatgaa |
297 |
Q |
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| T |
33909884 |
aatttgatgaaaagttgttcggcaaaacaattaattctgagttgccaatatcatgtgcaatctttcggacaatatatttgtaaggttgggaatatacgaa |
33909785 |
T |
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| Q |
298 |
ttgttatg-nnnnnnnnnncttcaacttattataatgannnnnnngaaataactgattataatgatatgaacagttttttgagaggcatgatattgatat |
396 |
Q |
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| T |
33909784 |
ttgttatgtttttttttttcttcaactgattataatgatttttttgaaataactgattataatgatatgaacagttttttgagaggca------tgatat |
33909691 |
T |
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| Q |
397 |
gattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatgttgtcttttgaatcagg |
496 |
Q |
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| T |
33909690 |
gattatgaactatgttttattttttaacctctgaagtcacaaaaattttataacatgatatctggaattgaaaattcctaatggtgtcttttgaatcagg |
33909591 |
T |
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| Q |
497 |
ccaaactgacaaacatcgaccaggat |
522 |
Q |
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| T |
33909590 |
ccaaactgacaaacatcgaccaggat |
33909565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 469
Target Start/End: Complemental strand, 33924774 - 33924726
Alignment:
| Q |
421 |
taacctctgaagtcacaaaaattttataacatgatatctggaattgaaa |
469 |
Q |
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| T |
33924774 |
taacctctgaagtcaccaaaattttataatatgatatctggagttgaaa |
33924726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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