View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20289_high_7 (Length: 241)

Name: NF20289_high_7
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20289_high_7
NF20289_high_7
[»] chr5 (3 HSPs)
chr5 (1-226)||(5015751-5015978)
chr5 (151-201)||(3156552-3156603)
chr5 (168-198)||(133575-133605)
[»] chr3 (2 HSPs)
chr3 (151-192)||(49088779-49088820)
chr3 (166-201)||(19126685-19126720)
[»] chr7 (4 HSPs)
chr7 (151-201)||(8261435-8261486)
chr7 (166-200)||(14623493-14623527)
chr7 (153-201)||(7908611-7908660)
chr7 (166-206)||(30397082-30397122)
[»] chr1 (2 HSPs)
chr1 (152-201)||(2613740-2613790)
chr1 (166-204)||(40735013-40735051)
[»] chr8 (1 HSPs)
chr8 (149-192)||(13958838-13958882)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5015751 - 5015978
Alignment:
Q  1 cctcgtgcagatgttcttaaagcttgactaggatacttacctagctacacttggagaagtgcttatgaagcattgtgaggctgcaaatggagagtggata 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5015751 cctcgtgctgatgttcttaaagcttgactaggatacttacctagctacacttggaaaagtgcttatgaagcattgtgaggctgcaaatggagagtggata 5015850  T
Q  101 atggtacattttatacacatttgagaggctaatttgttg-ccnnnnnnngcggtggtcgggattcg-accccaaaccttacatattttatgcatcgtcca 198  Q
    ||||||||||||||| ||||||||||||||||||||||| |        ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||    
T  5015851 atggtacattttataaacatttgagaggctaatttgttgtcttttttttgcggtggtcggaattcgaaccccaaatcttacctattttatgcatcgtcca 5015950  T
Q  199 tactaaattaattgataaatgatatttt 226  Q
    ||||||||||||||||||||||||||||    
T  5015951 tactaaattaattgataaatgatatttt 5015978  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 3156603 - 3156552
Alignment:
Q  151 ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac 201  Q
    |||||||||||||||| ||||||| ||||||||||||||||||  |||||||    
T  3156603 ggtggtcgggattcgaaccccaaatcttacatattttatgcattatccatac 3156552  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 133575 - 133605
Alignment:
Q  168 cccaaaccttacatattttatgcatcgtcca 198  Q
    |||||||||||||||||||||||||||||||    
T  133575 cccaaaccttacatattttatgcatcgtcca 133605  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 49088820 - 49088779
Alignment:
Q  151 ggtggtcgggattcgaccccaaaccttacatattttatgcat 192  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  49088820 ggtggtcgggattcgaactcaaaccttacatattttatgcat 49088779  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 19126685 - 19126720
Alignment:
Q  166 accccaaaccttacatattttatgcatcgtccatac 201  Q
    ||||||||||||||||||||||||||| ||||||||    
T  19126685 accccaaaccttacatattttatgcattgtccatac 19126720  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 8261435 - 8261486
Alignment:
Q  151 ggtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac 201  Q
    ||||| |||||||||| |||||||||||||||||||||||||| ||| ||||    
T  8261435 ggtggccgggattcgaaccccaaaccttacatattttatgcattgtctatac 8261486  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 14623493 - 14623527
Alignment:
Q  166 accccaaaccttacatattttatgcatcgtccata 200  Q
    ||||||||||||||||||||||||||| |||||||    
T  14623493 accccaaaccttacatattttatgcattgtccata 14623527  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 7908660 - 7908611
Alignment:
Q  153 tggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac 201  Q
    |||||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  7908660 tggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac 7908611  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 30397122 - 30397082
Alignment:
Q  166 accccaaaccttacatattttatgcatcgtccatactaaat 206  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  30397122 accccgaaccttacatattttatgcattgtccataccaaat 30397082  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 2613790 - 2613740
Alignment:
Q  152 gtggtcgggattcga-ccccaaaccttacatattttatgcatcgtccatac 201  Q
    ||||||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  2613790 gtggtcggggttcgaaccccgaaccttacatattttatgcattgtccatac 2613740  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 40735013 - 40735051
Alignment:
Q  166 accccaaaccttacatattttatgcatcgtccatactaa 204  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  40735013 accccgaaccttacatattttatgcattgtccatactaa 40735051  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 13958882 - 13958838
Alignment:
Q  149 gcggtggtcgggattcga-ccccaaaccttacatattttatgcat 192  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||    
T  13958882 gcggtgttcgggattcgaaccccaaaccttacatatattatgcat 13958838  T

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