View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20289_low_4 (Length: 338)
Name: NF20289_low_4
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20289_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 20384952 - 20385261
Alignment:
| Q |
14 |
agactcagtcacatagaatataaggtgtaatttgatgttcccaaccatgcttagtgtactaggaacgaagaaaatcctctcattaataaaaatccaatta |
113 |
Q |
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| T |
20384952 |
agactcggtcacatagaatataaggtgtattttgatgttcccaaccatgcttagtgtactaggaacgaagaaaatcctctcatcaataaaaatccaatta |
20385051 |
T |
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| Q |
114 |
ttgagactgcaaatattatttttcatccattgtattccccaagttttcagcatgccacctaagaaaactagatttacaactttcacttccaacaaagtca |
213 |
Q |
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| T |
20385052 |
gtgagactgcaaatattatttttcatccattgtattccccaagttttctgcatgccacctaagaaaactagatttacaactttcacttccaacaaagtca |
20385151 |
T |
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| Q |
214 |
aactaaacaaacatgttgctaacatatgcaataaaaaatat----gagagagagggagaaattatgttatgcataactcaaggctggagagaggtgcttc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20385152 |
aactaaacaaacatgttgctaacatatgcaataaaaaatatgagagagagagagggagaaattatgttatgcataactcaaggctggagagaggtgcttc |
20385251 |
T |
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| Q |
310 |
atatctcagg |
319 |
Q |
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|||||||||| |
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| T |
20385252 |
atatctcagg |
20385261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 20364328 - 20364500
Alignment:
| Q |
98 |
aataaaaatccaattattgagactgcaaatattatttttcatccattgtattccccaagttttcagcatgccacctaagaaaactagatttacaactttc |
197 |
Q |
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|||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
20364328 |
aataaaaatccaatcagtgagtctgcaaatattatttttcatccattgtattccctaagttttctgcatgccaccaaagaaaactagatttacaactttc |
20364427 |
T |
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| Q |
198 |
acttccaacaaagtc--aaactaaacaaacatgttgctaacatatgcaataaaaaatatgagagagagggaga |
268 |
Q |
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| T |
20364428 |
acttccaacaaagtcatacactaaacaaacatgttgctaacatatgcaataaaaaatacgagagagagagaga |
20364500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 98 - 311
Target Start/End: Original strand, 20372258 - 20372481
Alignment:
| Q |
98 |
aataaaaatccaattattgagactgcaaatattatttttcatccattgtattccccaagttttcagcatgccacctaagaaaactagatttacaactttc |
197 |
Q |
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|||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||| ||||||| |
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| T |
20372258 |
aataaaaatccaattagtgagtctccaaatattatttttcatccattgtattccctaagttttctgcatgccaccaaagaaaacaagatttataactttc |
20372357 |
T |
|
| Q |
198 |
acttccaacaaagtcaa--actaaac-aaacatgttgctaacatatgcaataaaaaatatg----agagagagg--gagaaattatgttatgcataactc |
288 |
Q |
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| T |
20372358 |
acttccaacaatgtcaaacactaaacaaaacctgctgctaacatatgcaataaaaaatatgagatagagagagggagagaaattatgttctgcataactc |
20372457 |
T |
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| Q |
289 |
-aaggctggagagaggtgcttcat |
311 |
Q |
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|||| || ||||||||||||||| |
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| T |
20372458 |
aaaggttgaagagaggtgcttcat |
20372481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 20393755 - 20393842
Alignment:
| Q |
14 |
agactcagtcacatagaatataaggtgtaatttgatgttcccaaccatgcttagtgtactaggaacgaagaaaatcctctcattaata |
101 |
Q |
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|||||| || |||||||||||| |||||| |||||||||| || |||| || |||||||||| ||||||||||||||||||| |||| |
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| T |
20393755 |
agactcggtaacatagaatatatggtgtattttgatgttctcagtcatgtttggtgtactaggtacgaagaaaatcctctcatcaata |
20393842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 20343994 - 20344065
Alignment:
| Q |
177 |
aaaactagatttacaactttcacttccaacaaagtc--aaactaaacaaacatgttgctaacatatgcaata |
246 |
Q |
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||||||||||| ||||||||||||||||||||||| | |||| | |||||||||||||||||| |||||| |
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| T |
20343994 |
aaaactagattcgcaactttcacttccaacaaagtcgaacactagaaaaacatgttgctaacataagcaata |
20344065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 45575552 - 45575634
Alignment:
| Q |
14 |
agactcagtcacatagaatataaggtgtaatttgatgttcccaaccatgcttagtgtactaggaacgaagaaaatcctctcat |
96 |
Q |
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||||||| | ||||||||||||| ||| |||||||||||||||||||| | |||||||||| | | ||||||||||||||| |
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| T |
45575552 |
agactcaataacatagaatataaaaagtactttgatgttcccaaccatgcctggtgtactaggcatggagaaaatcctctcat |
45575634 |
T |
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