View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20289_low_5 (Length: 315)
Name: NF20289_low_5
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20289_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 13976257 - 13976539
Alignment:
| Q |
16 |
ataaagaagaaaaacatagccctccctaccgggcaattgaaaaacactgcccagaaacaaagggctataagnnnnnnnntactatatagtttatagaaaa |
115 |
Q |
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| T |
13976257 |
ataaagaagaaaaacatagccctccctaccgggcaattgaaaaacactgcccagaaataaagggctataagaaaaaaaatactatatagtttatagaaaa |
13976356 |
T |
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| Q |
116 |
attaattgnnnnnnnataaaatatgggaggaaatgacaataatggtggccaaggccaagggaaaaagtatgcacttcttggcgtatcttgcatacttctt |
215 |
Q |
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| T |
13976357 |
attaattgtttttttataaaatatgggaggaaatgacaataatggtggccaaggccaagggaaaaagtatgcacttcttggtgtatcttgcatacttctt |
13976456 |
T |
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| Q |
216 |
gtggctatggtgggcgccgtcgcagttagtttaacaaaaggtgacgacaaagaacaaacagcacaaatctcaaactcacaaaa |
298 |
Q |
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| T |
13976457 |
gtggctatggtgggcgccgtcgcagttagtttaacaaaaggtgacgacaaagaacaaacagcacaaatctcaaactcacaaaa |
13976539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 25 - 298
Target Start/End: Original strand, 13966096 - 13966371
Alignment:
| Q |
25 |
aaaaacatagccctccctaccgggcaattgaaaaacactgcccagaaacaaagggcta-taagnnnnnnnn--tactatatagtttatagaaaaattaat |
121 |
Q |
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| T |
13966096 |
aaaaacatagccctctctaccgggcaattgaaaaacactgcccagaaataaagggctaataagaaaaaaaaaatactatatagtttatagaaaaattaat |
13966195 |
T |
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| Q |
122 |
tgnnnnnnnataaaatatgggaggaaatgacaataatggtggccaaggccaagggaaaaagtatgcacttcttggcgtatcttgcatacttcttgtggct |
221 |
Q |
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| T |
13966196 |
tgtttttt-ataaaatatgggaggaaatgacaataatggtggccaaggccaagggaaaaagcatgcacttcttggtgtatcttgcatacttcttgtggct |
13966294 |
T |
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| Q |
222 |
atggtgggcgccgtcgcagttagtttaacaaaaggtgacgacaaagaacaaacagcacaaatctcaaactcacaaaa |
298 |
Q |
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| T |
13966295 |
atggtaggcgtcgtcgcagttagtttaacaaagggtggcgatggagaacaaaaagcacatatctctaactcgcaaaa |
13966371 |
T |
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