View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20289_low_9 (Length: 238)
Name: NF20289_low_9
Description: NF20289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20289_low_9 |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 41759040 - 41758887
Alignment:
| Q |
68 |
tgtatgatgttactaaattttttcttatttatttttctcaatttatgtgagtctgtgtaaatttctttctttgcgcttgtgcccaaataacaactgctct |
167 |
Q |
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| T |
41759040 |
tgtatgatgttactaaattttttcttatttatttttctcaatttatgtgagtctgtgtaaatttctttctttgcgcttgtgcccaaataacaactgctct |
41758941 |
T |
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| Q |
168 |
aagatcttaaagagcaatctgaccatgcatgaaaataccttagctagtgcctct |
221 |
Q |
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| T |
41758940 |
aagatcttaaagagcaatctgaccatgcatgaaaataccttagctagtgcctct |
41758887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 21201891 - 21201843
Alignment:
| Q |
71 |
atgatgttactaaattttttcttatttatttttctcaatttatgtgagt |
119 |
Q |
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| T |
21201891 |
atgatgtgactaaattttttctcatttatttttctcctttgatgtgagt |
21201843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 8332532 - 8332484
Alignment:
| Q |
71 |
atgatgttactaaattttttcttatttatttttctcaatttatgtgagt |
119 |
Q |
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| T |
8332532 |
atgatgtgattaaattttttctcatttatttttctctatttatgtgagt |
8332484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 39691714 - 39691771
Alignment:
| Q |
71 |
atgatgttactaaattttttcttatttatttttctcaatttatgtgagtctgtgtaaa |
128 |
Q |
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| T |
39691714 |
atgatgtgactatatttattctcatttattttactcaatttatgtgagtgtgtataaa |
39691771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 16185806 - 16185854
Alignment:
| Q |
71 |
atgatgttactaaattttttcttatttatttttctcaatttatgtgagt |
119 |
Q |
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| T |
16185806 |
atgattttattaaattctttcttatttattttactccatttatgtgagt |
16185854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 7810 - 7858
Alignment:
| Q |
71 |
atgatgttactaaattttttcttatttatttttctcaatttatgtgagt |
119 |
Q |
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||||||| |||||||| ||||| ||||||||||| | |||||||||||| |
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| T |
7810 |
atgatgtgactaaattctttctcatttatttttcgccatttatgtgagt |
7858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 1867676 - 1867716
Alignment:
| Q |
79 |
actaaattttttcttatttatttttctcaatttatgtgagt |
119 |
Q |
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| T |
1867676 |
actaaattatttctcatttatttttctccatttatgtgagt |
1867716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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