View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2028_high_18 (Length: 242)
Name: NF2028_high_18
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30842175 - 30841954
Alignment:
| Q |
1 |
aaacaaatgatcatgatcctgaaccaatccgcaacaattgacccttagaaaacatatttagttaggtaataaaatacttgacctttgggaaacatattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30842175 |
aaacaaatgatcatgatcctgaaccaatccgcaatgattgacccttagaaaacatatttagttaggtaataaaatacttgacctttgggaaacatattta |
30842076 |
T |
|
| Q |
101 |
gttaggtaatgaaatgaatacaaatcaatagttgtcatcctctctaaaaatatcaatagtcgtcatataaattttactgcacatttttatctttttgaag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30842075 |
gttaggtaatgacatgaatacaaatcaatagttgtcatcctctaaaaaaatatcaatagtcctcatataaattttactgcacatttttatctttttgaag |
30841976 |
T |
|
| Q |
201 |
caccatgtattatataagttga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30841975 |
caccatgtattatataagttga |
30841954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 30848490 - 30848349
Alignment:
| Q |
86 |
tgggaaacatatttagttaggtaatgaaatgaatacaaatcaatagttgtcatcctctctaaaa---atatcaatagtcgtcatataaattttactgcac |
182 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
30848490 |
tgggaaacatatttagttaggtaatgacattaatacaaatcaatagttgccatcctctcaaaaaaatatatcaatagttgtcatataaattttattacac |
30848391 |
T |
|
| Q |
183 |
atttt--tatctttttgaagcaccatgtattatataagttga |
222 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
30848390 |
attttgatatcttttcgaagcactatgtattatataagttga |
30848349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University