View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_high_2 (Length: 511)
Name: NF2028_high_2
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 15630706 - 15631160
Alignment:
| Q |
19 |
agcttgaatatacaagaagctaatgaactgaaaaattgtattcacaaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactag |
118 |
Q |
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| T |
15630706 |
agcttgaatatacaagaagctaatgaactgaaaaattgtatttacaaaatttgaattgtgcattacatacagtgcatatgctctatatgactctaactag |
15630805 |
T |
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| Q |
119 |
aattagttattaatccctactaacttagaaaattgtctaacaaacgcagtttgttagctagtcaactagtcaatgacttgcgatacaagtaaccatctaa |
218 |
Q |
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| T |
15630806 |
aattagttattaatccctactaacttagaaaattgtctaacaaacgcagtttgttagctagtcaactagtcagtgacttgcgatacaagtaaccatctaa |
15630905 |
T |
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| Q |
219 |
gcttttttaattcctcaatcaacacagatactctactctatttcatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgct |
318 |
Q |
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| T |
15630906 |
gcttttttaattccacaatcaacacacatactctactctactttatcaattgcatgcggtactgaactcaataaggaacgcttgaccaataatacatgct |
15631005 |
T |
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| Q |
319 |
ttgcatctcgcaaagtaaagtatcgctcattttggtgaatgccatagattgcacacgtaactagtttgataatatcaagtgctcgttagggtattcatct |
418 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15631006 |
ttgcatctcgcagagtaaagtatcgctcattttggtgaatgccatagattgcacacgtaactaatttgataatatcaagtgctcgttagggtattcatct |
15631105 |
T |
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| Q |
419 |
ccaagccaccaaggacttttcccacccttgatcacgac-ttcgcatctccctcat |
472 |
Q |
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| T |
15631106 |
ccaagccaccaaggacttttcccacccttgatcacgactttggcatctccctcat |
15631160 |
T |
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