View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_high_3 (Length: 459)
Name: NF2028_high_3
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 3006787 - 3006409
Alignment:
| Q |
1 |
ccaagttaccgagtggcaagaaggctattgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtagggctattctgatg |
100 |
Q |
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| T |
3006787 |
ccaagttaccaagtggcaagaaggctgttgatgtaaaatcgcactttagaatttcatgagcaatccctgaacaacttaatctagtaggactattctgatg |
3006688 |
T |
|
| Q |
101 |
gtgactagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaat |
200 |
Q |
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| T |
3006687 |
gtgactagtgtggagataaaattgataggaggagcacaattagttatgtgtttaaggtacaaggagatcgtatctcatggccatataagaagcaattaat |
3006588 |
T |
|
| Q |
201 |
ggtttc-tttatcaagttatgaagaataatatgtagtaggatcttcaggtgcatgtcaagctaactactggctacaaaatgtgatggaagatttgacgat |
299 |
Q |
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| T |
3006587 |
ggtttcttttatcaagttatgaagaataatatggagtaggatcttcagttgcatgtcaagctaactacgggctacaaaatgtgatggaagatttgacgat |
3006488 |
T |
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| Q |
300 |
aaaactgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcctatagattaagg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3006487 |
aaaactgaagcatcaagtaaaattattgattattgatatataacaagtatgctattgctaagaatcccatagattaagg |
3006409 |
T |
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