View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_high_8 (Length: 405)
Name: NF2028_high_8
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 22683018 - 22683393
Alignment:
| Q |
19 |
attttttcatttcaatttacaccaaaatgtgtatnnnnnnntagagaaatagacaaaacagaatagagaaataaagggaaacatttgctagtgcgataga |
118 |
Q |
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| T |
22683018 |
attttttcatttcaatttacaccaaaatgtgtataaaaaaatagagaaatagacaaaacagaatagagaaataaagggaaacatttgctagtggtatgga |
22683117 |
T |
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| Q |
119 |
aggcttctgctactgatattcattttcatcaaagaaacattacaagcaaatgctcattctcacaattcacaagcacataattataatccttctctcatga |
218 |
Q |
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| T |
22683118 |
aggcttatgctactgatattcattttcatcaaagaaacattacaagcaaatgctcattctcacaattcacaagcatataattataatccttctctcatga |
22683217 |
T |
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| Q |
219 |
ctacagatcaagatagctttttcaaaccacataaagcatacaacaaacaattttgtcttacaagtccaaaaatatccaacacaagccaagaaaagaagtg |
318 |
Q |
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| T |
22683218 |
ttacagatcaagatagcttgttcaaaccacataaagcata-aacaaacaattttgtcttacaagtctaaaaatatccaacacaagccaagaaaagaagtg |
22683316 |
T |
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| Q |
319 |
agttttacaaagaaaataagactatcatttagtctccatcgccaaatattcttgcagtagctgagtatgttcctatg |
395 |
Q |
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| T |
22683317 |
agttttacaaagaaaataacactatcatttaatctccatcgccaaatattcttgaagtagctgagtatgttcctatg |
22683393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 393
Target Start/End: Original strand, 22694879 - 22694963
Alignment:
| Q |
309 |
aaaagaagtgagttttacaaagaaaataagactatcatttagtctccatcgccaaatattcttgcagtagctgagtatgttccta |
393 |
Q |
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|||| |||||| |||||||| | | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22694879 |
aaaaaaagtgacttttacaataatattaatactatcatttagtctccatcgccaaatattcttgtagtagctgagtatgttccta |
22694963 |
T |
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