View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2028_high_9 (Length: 397)

Name: NF2028_high_9
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2028_high_9
NF2028_high_9
[»] chr1 (8 HSPs)
chr1 (31-384)||(16427422-16427781)
chr1 (66-376)||(16416511-16416821)
chr1 (67-339)||(16432822-16433089)
chr1 (220-384)||(16443016-16443180)
chr1 (219-362)||(16499315-16499458)
chr1 (231-339)||(16438192-16438300)
chr1 (220-351)||(16419715-16419846)
chr1 (22-75)||(16433631-16433684)
[»] chr8 (8 HSPs)
chr8 (250-299)||(2053869-2053918)
chr8 (256-299)||(2032628-2032671)
chr8 (250-296)||(2021933-2021979)
chr8 (250-295)||(1950865-1950910)
chr8 (250-295)||(2028086-2028131)
chr8 (250-295)||(2036677-2036722)
chr8 (250-295)||(2046054-2046099)
chr8 (250-295)||(10767261-10767306)
[»] chr2 (2 HSPs)
chr2 (250-294)||(28713715-28713759)
chr2 (250-294)||(28743615-28743659)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 31 - 384
Target Start/End: Complemental strand, 16427781 - 16427422
Alignment:
Q  31 ttttgaatataaaaaacatacggaatatattattaaa------ctcttcttccctctgtatctctttcttcattgcttggtaacgtattttcagaaaaat 124  Q
    |||| |||||||||||| || ||||||||||||||||      |||||||||||| | ||||||||||||||||||||| ||||| | ||||||||||||    
T  16427781 ttttaaatataaaaaacgtagggaatatattattaaaatgtaactcttcttccctttatatctctttcttcattgcttgctaacgcactttcagaaaaat 16427682  T
Q  125 atccaatgttctgtttttggattccaaaaaactattcattctagaaaactccaaaggctaatccagtcaaaaaggaaaatataggatcactgcacatgga 224  Q
    || | ||||| ||||||| |||| || ||||||||||  | ||||||||| |||| | ||||| ||   ||||||||| |||||| ||||| | ||||||    
T  16427681 attctatgttttgtttttagattgcagaaaactattctgtgtagaaaacttcaaaaggtaatctagaagaaaaggaaattatagggtcactacgcatgga 16427582  T
Q  225 agatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgtattttc 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  16427581 agatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttagaggacttgttgatgcagggattacaaaggtccctcgtattttc 16427482  T
Q  325 aatcaaccacctgatagcaccaagaaggcatcagagtcaggggacacaacaactattcct 384  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16427481 tatcaaccacctgatagcaccaagaaggcatcagagtcaggggacacaacaactattcct 16427422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 66 - 376
Target Start/End: Complemental strand, 16416821 - 16416511
Alignment:
Q  66 aactcttcttccctctgtatctctttcttcattgcttggtaacgtattttcagaaaaatatccaatgttctgtttttggattccaaaaaactattcattc 165  Q
    |||||||||||||||||||||| ||||||||||||||||||| | | |||| ||||||||| | ||||| ||||||| |||| || ||||||||||  |     
T  16416821 aactcttcttccctctgtatctatttcttcattgcttggtaatgcactttccgaaaaatattctatgttttgtttttagattgcagaaaactattctgtg 16416722  T
Q  166 tagaaaactccaaaggctaatccagtcaaaaaggaaaatataggatcactgcacatggaagatttagaaagagtaaaagaactaaaagcttttgatgaaa 265  Q
    ||||||||| |||| | ||||| ||   ||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16416721 tagaaaacttcaaaaggtaatctagaagaaaaggaaattatagggtcactacgcatggaagatttagaaagagtaaaagaactaaaagcttttgatgaaa 16416622  T
Q  266 caaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgtattttcaatcaaccacctgatagcaccaagaaggcatcagagtcagg 365  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||| ||||||| | |||||||||||||||||||||||||| |||    
T  16416621 caaaacttggtgttaaaggacttgtcgatgcagggattacaaagatccctcgtattttctatcaaccccgtgatagcaccaagaaggcatcagagttagg 16416522  T
Q  366 ggacacaacaa 376  Q
    | | |||||||    
T  16416521 gcatacaacaa 16416511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 67 - 339
Target Start/End: Complemental strand, 16433089 - 16432822
Alignment:
Q  67 actcttcttccctctgtatctctttcttcattgcttggtaacgtattttcagaaaaatatccaatgttctgtttttggattccaaaaaactattcattct 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16433089 actcttcttccctctgtatctctttcttcattgcttggtaacgtattttcagaaaaatatccaatgttctgtttttggattgcaaaaaactattcattct 16432990  T
Q  167 agaaaactccaaaggctaatccagtcaaaaaggaaaatataggatcactgcacatggaagatttag-aaagagtaaaagaactaaaagcttttgatgaaa 265  Q
    | |||| || |||||  ||||||| | ||||||||| ||||||||||||   |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  16432989 acaaaattcgaaagggcaatccagccgaaaaggaaattataggatcactaggcatggaagatttagaaaagagtaaaagaacttaaagcttttgatgaaa 16432890  T
Q  266 caaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgtattttcaatcaaccacctgat 339  Q
     ||||||||||||||||||||||||      ||||||||| || ||||||||||| ||| ||||||||||||||    
T  16432889 aaaaacttggtgttaaaggacttgt------agggattaccaaggtccctcgtatcttctatcaaccacctgat 16432822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 220 - 384
Target Start/End: Complemental strand, 16443180 - 16443016
Alignment:
Q  220 atggaagatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgta 319  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||| ||    
T  16443180 atggaagatttagaaagaataaaagaactaaaagattttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattaccaaaatccctcata 16443081  T
Q  320 ttttcaatcaaccacctgatagcaccaagaaggcatcagagtcaggggacacaacaactattcct 384  Q
    | ||  |||| | ||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  16443080 tattttatcatctacctgataaaatcaagaaggcatcagagtcaggggacacaacaactattcct 16443016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 362
Target Start/End: Original strand, 16499315 - 16499458
Alignment:
Q  219 catggaagatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgt 318  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||| |    
T  16499315 catggcagattcagaaagagtaaaagaactcaaagcttttgatgatacaaaacttggtgttaaaggacttgttgatgcagggattaccaaaatccctcat 16499414  T
Q  319 attttcaatcaaccacctgatagcaccaagaaggcatcagagtc 362  Q
    || ||  |||| | ||||||||  | ||||||||||||||||||    
T  16499415 atattttatcatctacctgataaaatcaagaaggcatcagagtc 16499458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 16438192 - 16438300
Alignment:
Q  231 agaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgtattttcaatcaa 330  Q
    ||||||| |||||  ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||  |||||||||| ||| ||||     
T  16438192 agaaagaataaaaacactaaaagcttttgatgaaacaaaattgggtgttaaaggacttgttgatgcagggattaccaagatccctcgtatgttctatcat 16438291  T
Q  331 ccacctgat 339  Q
    |||||||||    
T  16438292 ccacctgat 16438300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 16419846 - 16419715
Alignment:
Q  220 atggaagatttagaaagagtaaaagaactaaaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagggattacaaatgtccctcgta 319  Q
    |||||||||| ||| ||||| |||  ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||  |||||| ||    
T  16419846 atggaagattcagagagagtgaaaatactgaaagcttttgatgaaacaaaatttggtgtaaaaggacttgttgatgcagggattaccaagatccctcata 16419747  T
Q  320 ttttcaatcaaccacctgatagcaccaagaag 351  Q
    | ||| |||| |||||||||  ||||||||||    
T  16419746 tgttctatcatccacctgatcacaccaagaag 16419715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 16433684 - 16433631
Alignment:
Q  22 tcgagatccttttgaatataaaaaacatacggaatatattattaaactcttctt 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16433684 tcgagatccttttgaatataaaaaacatacggaatatattattaaactcttctt 16433631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 2053869 - 2053918
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 299  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||||||    
T  2053869 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2053918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 2032628 - 2032671
Alignment:
Q  256 tttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg 299  Q
    |||||||||||||||  |||||| ||||||||||||||||||||    
T  2032628 tttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg 2032671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 2021933 - 2021979
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatgc 296  Q
    ||||| |||||||||||||||  |||||| |||||||||||||||||    
T  2021933 aaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatgc 2021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 1950910 - 1950865
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 295  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  1950910 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 1950865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 2028086 - 2028131
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 295  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2028086 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 2028131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 2036677 - 2036722
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 295  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2036677 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2036722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 2046054 - 2046099
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 295  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  2046054 aaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2046099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 10767261 - 10767306
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgatg 295  Q
    ||||| |||||||||||||||  |||||| ||||||||||||||||    
T  10767261 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 10767306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 28713759 - 28713715
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 294  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28713759 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28713715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 28743659 - 28743615
Alignment:
Q  250 aaagcttttgatgaaacaaaacttggtgttaaaggacttgttgat 294  Q
    ||||| |||||||||||||||  |||||||||||| |||||||||    
T  28743659 aaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28743615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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