View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_1 (Length: 819)
Name: NF2028_low_1
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 432 - 759
Target Start/End: Original strand, 9870827 - 9871149
Alignment:
| Q |
432 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
531 |
Q |
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| T |
9870827 |
tttatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaagcaaaatgattcctact |
9870926 |
T |
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| Q |
532 |
atattcttttagatatgtcgatctcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaa |
631 |
Q |
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| T |
9870927 |
atattcttttagacatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaa |
9871026 |
T |
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| Q |
632 |
ggtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaataattttcctttagaaaaaagag |
731 |
Q |
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| T |
9871027 |
ggtcaaatttatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggtatagaaaaaaaaa-----aattaaagaaaagag |
9871121 |
T |
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| Q |
732 |
ttcaagtctaagaagctttgacaagtga |
759 |
Q |
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| T |
9871122 |
ttcaagtctaagaagctttgacaagtga |
9871149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 434 - 708
Target Start/End: Original strand, 9876367 - 9876642
Alignment:
| Q |
434 |
tatgttcctactgctagttcttacgtatgaccgtagattatcatgcgaatataaatgtgaactgtaaattacatcaacaaag-caaaatgattcctacta |
532 |
Q |
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| T |
9876367 |
tatgttcctaatgccagtacttacctatgacactatatcatcatgcgcataaaaatgtgaactccaaattacactaacaaaggcaaaatgattcctacta |
9876466 |
T |
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| Q |
533 |
tattcttttagatatgtcgatctcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaag |
632 |
Q |
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| T |
9876467 |
taatcttttagacatgtccatttcaatatggacctacatggattttatctacttatataatgttttaaaaaacattatttggataaagaatacttccaag |
9876566 |
T |
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| Q |
633 |
gtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaa |
708 |
Q |
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| T |
9876567 |
gtcaaatatatacgtcaccttctatagtttaaagggaaacgttgatatatcacaagagttatcgacataccaaaaa |
9876642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 9870658 - 9870770
Alignment:
| Q |
264 |
ccatcacaaataatattaacatttattgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaa |
363 |
Q |
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| T |
9870658 |
ccatcacaaatgatattaacatttaccgtttttaaaacataattaacatggtataaacttctaatttttccttggagaaagagagtttagataagtacaa |
9870757 |
T |
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| Q |
364 |
tcagggtacatgc |
376 |
Q |
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| T |
9870758 |
tcagggtacatgc |
9870770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 9870479 - 9870660
Alignment:
| Q |
23 |
tttatgtggggatagtaaggtgatttgtagagagaggtttaggtggtttt--cagattgtataagctaaaaatccccaaaaagaagttc--atattatat |
118 |
Q |
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| T |
9870479 |
tttatgtggggatagtatggtggtttgtagagagaggtttaggtggttttcgcggattgtataagctaaaaatcctcaaaaagaagttcatatattatat |
9870578 |
T |
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| Q |
119 |
aatctagatttcataatatagaaagacaaatgagaagagagtagggtgg-aaaaaga---tactactatgaccatataccca |
196 |
Q |
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| T |
9870579 |
aatctggattttataatatagaaagacaaataagaagagtgtacagtggaaaaaagatactactactatgaccatataccca |
9870660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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