View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_13 (Length: 360)
Name: NF2028_low_13
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 3003752 - 3003825
Alignment:
| Q |
19 |
atgaacatggtataatcgtcagcaattaataaccagtgaggttgatggatatgaaataaccaagaaacaaacataaat |
96 |
Q |
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| T |
3003752 |
atgaacatggtataattgtcagc---taataaccagtgaggttg-tagatatgaaataaccaagaaacaaacataaat |
3003825 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 15202442 - 15202499
Alignment:
| Q |
198 |
tactaatctcaatatgccttcttaattcaaactttcaaaagtcaccactcctagttcc |
255 |
Q |
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| T |
15202442 |
tactaatcttaacatgccttcttaatgcaaattttcaaaagctacaactcctagttcc |
15202499 |
T |
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