View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2028_low_16 (Length: 279)
Name: NF2028_low_16
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 42223646 - 42223400
Alignment:
| Q |
16 |
atagaggtggacctgtcgcaggttgtggttgctaatggtaaccaacggtccaagtaaaattattgatcatgatggattaatgtggaaggccgacagactc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223646 |
atagaggtggacctgtcgcaggttgtggttgctaatggtaacaaacagtccaagtaaaattattgatcatgatggattaatgtggaaggccgacagactc |
42223547 |
T |
|
| Q |
116 |
gtctaacctcccatttcatcattgctactataaaattatgggaaatgctaatttatccttatcatctttcgttttccatccaaccttgttgggatgtttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
42223546 |
gtctaacctcccatttcatcattgctactataaaattatgggaaatgctaatttatccttatcatttttcgttttccatccaatcttgttgggatgtttt |
42223447 |
T |
|
| Q |
216 |
gtttttaaagatgcaattttatcattgcctaaagcaatgcctgaagt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223446 |
gtttttaaagatgcaattttatcattgcctaaagcaatgcctgaagt |
42223400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University