View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2028_low_17 (Length: 278)

Name: NF2028_low_17
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2028_low_17
NF2028_low_17
[»] chr4 (4 HSPs)
chr4 (153-263)||(35902676-35902786)
chr4 (153-273)||(23892461-23892582)
chr4 (19-59)||(9203967-9204007)
chr4 (19-59)||(9208186-9208226)
[»] scaffold0135 (7 HSPs)
scaffold0135 (19-59)||(2050-2090)
scaffold0135 (19-59)||(6265-6305)
scaffold0135 (19-59)||(10480-10520)
scaffold0135 (19-59)||(14695-14735)
scaffold0135 (19-59)||(18910-18950)
scaffold0135 (19-59)||(23125-23165)
scaffold0135 (19-59)||(27340-27380)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 35902676 - 35902786
Alignment:
Q  153 tttagttttaattagattctttatctaatttttagtttcagtttggtcat-atatagtctcattttatattcagtttcgtcttaatgatcctttatattt 251  Q
    |||||||||| |||| |||||||||| | |||||  |||||||||||||| ||||||||||||||| |||||| ||| ||| |||||||||||||| |||    
T  35902676 tttagttttagttaggttctttatcttacttttaaattcagtttggtcataatatagtctcattttttattca-tttagtcctaatgatcctttattttt 35902774  T
Q  252 tttaaattgttc 263  Q
    || |||||||||    
T  35902775 ttcaaattgttc 35902786  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 23892461 - 23892582
Alignment:
Q  153 tttagttttaattagattctttatctaatttttagtttcagtttggtcata-tatagtctcattttatattcagtttcgtcttaatgatcctttatattt 251  Q
    |||||||||| || | || ||||||| |||||||  | ||||||| ||||| ||| ||||||||||||||||| ||| ||| |||||| ||||||| |||    
T  23892461 tttagttttagtttggttatttatcttatttttaaatccagtttgctcataatattgtctcattttatattcaatttagtcctaatgaccctttattttt 23892560  T
Q  252 tttaaattgttcctttgcttct 273  Q
    || ||||||||| || ||||||    
T  23892561 ttcaaattgttctttcgcttct 23892582  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 9203967 - 9204007
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9203967 caacctacaactcacaaagttgtttagcattgtgtttgatg 9204007  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 9208186 - 9208226
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9208186 caacctacaactcacaaagttgtttagcattgtgtttgatg 9208226  T

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Target: scaffold0135 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 2050 - 2090
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2050 caacctacaactcacaaagttgtttagcattgtgtttgatg 2090  T

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Target: scaffold0135; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 6265 - 6305
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6265 caacctacaactcacaaagttgtttagcattgtgtttgatg 6305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 10480 - 10520
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10480 caacctacaactcacaaagttgtttagcattgtgtttgatg 10520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 14695 - 14735
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14695 caacctacaactcacaaagttgtttagcattgtgtttgatg 14735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 18910 - 18950
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18910 caacctacaactcacaaagttgtttagcattgtgtttgatg 18950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23125 - 23165
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23125 caacctacaactcacaaagttgtttagcattgtgtttgatg 23165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 27340 - 27380
Alignment:
Q  19 caacctacaactcacaaagttgtttagcattgtgtttgatg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27340 caacctacaactcacaaagttgtttagcattgtgtttgatg 27380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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