View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2028_low_2 (Length: 632)
Name: NF2028_low_2
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 52799268 - 52799881
Alignment:
| Q |
1 |
cctagccctccatctttttcctgcttacacgtgtgctcccacttcacccaacgacttttatttttcgattccacctctccccataagaatttcctctcaa |
100 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| |||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52799268 |
cctagcccttcatctttttccggcttacacgtttgctcccacttcgcccaacaaattttatttttcgattccacccctccccataagaatttcctctcaa |
52799367 |
T |
|
| Q |
101 |
tccacattgtcatattagtgctactctctctattcatcatgttgattaagaaatgctacatcaactattgtttgccacatcagcttccgtttgtcaaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
52799368 |
tccacattgtcatattagtgctactctctctattcatcatgttgattaagaaatgctacatcaactattgtttgccacatcagattccgtttgccaaatc |
52799467 |
T |
|
| Q |
201 |
atattatttttgtaacaaaaaagtatccttaaggaacaaaaagcgatggtttcttatcttgcgagaatcaaattcaaagtgact-aaaaattatggggat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
52799468 |
atattatttttgtaacaaaaaagtatccttaagggacaaaaagcgatggtttcttattttgcgagaatcaaattcaaagtgactaaaaaattatagggat |
52799567 |
T |
|
| Q |
300 |
caaaacctgaaactgatatatttgtgaccactcatatgcttaaaccaaacaaataaacnnnnnnnnctttagtaatttccttataggaatccttaaagca |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
52799568 |
caaaacctgaaattgatatatttgtgaccactcatatgcttaaaccaaacaaataaac-tttttttcttcagtaatttccttataggaatccttaaagca |
52799666 |
T |
|
| Q |
400 |
gaagcatcatgcacatatagatcgacaaacctcaactaggt---aagnnnnnnnttgatgtgtcgatggagggagagagatagttaacggcatataagac |
496 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||| || | | ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52799667 |
gaagcat----cacaaatagatcgacaaaccccaactaggtaaaaaaaaaaaaatcggtgtgtggatggagggagagagatagttaacggcatataagac |
52799762 |
T |
|
| Q |
497 |
ggagtaggacggaaagcaagggtccccactagccaacatgaaacagcgttaacgataaaaagcatagacatttataacaaacccttgagaaactttctgt |
596 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52799763 |
ggagttggacggaaagcaagggtccccactagccaacatgaaacagcgttaacgataaaaagcatagacatttataacaaacccttgagaaactttctgt |
52799862 |
T |
|
| Q |
597 |
aatttggcaaagaccatac |
615 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
52799863 |
aatttggcaaagaccatac |
52799881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University