View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_20 (Length: 268)
Name: NF2028_low_20
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 39561815 - 39562058
Alignment:
| Q |
1 |
ttaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagct |
100 |
Q |
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| T |
39561815 |
ttaaagaatatttttaatgtgttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagct |
39561914 |
T |
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| Q |
101 |
gctcttatccattatccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaat |
200 |
Q |
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| T |
39561915 |
gctcttat-------ccttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgccttttgtgaatatattaataccatcttaat |
39562007 |
T |
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| Q |
201 |
cttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaa |
251 |
Q |
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| T |
39562008 |
cttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaa |
39562058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 39566511 - 39566737
Alignment:
| Q |
20 |
tgttggtttgagtttgagttgt--tgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatcc |
117 |
Q |
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| T |
39566511 |
tgtttgtttgagtttgagttgtgttgtatatgatgtattatatagtgtgcaaaaagtaaactggaaatgctttccaggaagctgctcttattc------- |
39566603 |
T |
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| Q |
118 |
ttgagcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtg |
217 |
Q |
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| T |
39566604 |
ttgagcactaacatagtgtattatataaaattgatccaatatctaagttgtgctctttgtgaatatattaataccatcttaatcttaaactatgcacatg |
39566703 |
T |
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| Q |
218 |
agattgtgttgaagattatatcttattaaagaaa |
251 |
Q |
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| T |
39566704 |
agattgtgtagaagattatatcttattaaagaaa |
39566737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 39560558 - 39560748
Alignment:
| Q |
54 |
attatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttgagcactaacatagtgtatagtataaaattgatc |
153 |
Q |
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| T |
39560558 |
attatgtagtgtggaaaaagtaaataggaaatgctttccatgaagttgatcttatct-------ttgaacactaacatagtatattgtataaaattgatc |
39560650 |
T |
|
| Q |
154 |
caatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaa |
251 |
Q |
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| T |
39560651 |
cagtatctcagttgtgccttttgtgaatatattaataccaacttattcttgaatcatgcacatcagattatgttgaagattatatattattaaagaaa |
39560748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 39572030 - 39572234
Alignment:
| Q |
21 |
gttggtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttccaggaagctgctcttatccattatccttg |
120 |
Q |
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| T |
39572030 |
gttggtttgagtttgaattgttgtaggtgatgtattatatagtgttgaaaaagtaaattggaaatgctttacaggaagctgctc-------ttatccttg |
39572122 |
T |
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| Q |
121 |
agcactaacatagtgtatagtataaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgaga |
220 |
Q |
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| T |
39572123 |
aacactaa------------tataaaatttgtccagtatctcagttgttcattttgcgaatatattactaccaacttaatcttatatcatgcacatgaga |
39572210 |
T |
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| Q |
221 |
ttgtgttgaagattatatcttatt |
244 |
Q |
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| T |
39572211 |
ttgtgttgaatattatatcttatt |
39572234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 39581249 - 39581181
Alignment:
| Q |
25 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtggaaaaggtaaattggaaatgctttcca |
93 |
Q |
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| T |
39581249 |
gtttgagtttaagttgttgtatgcgatgcattatatagtgtggaaaaagtaatgtggaaatgctttcca |
39581181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 39584755 - 39584661
Alignment:
| Q |
157 |
tatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaa |
251 |
Q |
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| T |
39584755 |
tatctcagttgtgccttttgtgaatatatggacaccaacttaatcttaaatcatgcgcattagattgtgttcaagattatattttactaaagaaa |
39584661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 39581146 - 39581030
Alignment:
| Q |
144 |
aaaattgatccaatatctcagttgtgctttttgtgaatatattaataccatcttaatcttaaacca-------tgcacgtgagattgtgttgaagat--t |
234 |
Q |
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| T |
39581146 |
aaaattgatctagtatctcagttgtgctttttgtgcatatattaataccaacttaatattgaatcatgcacattgcacatgagattgtgttgaagatcat |
39581047 |
T |
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| Q |
235 |
atatcttattaaagaaa |
251 |
Q |
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| T |
39581046 |
ataccttattaaagaaa |
39581030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 39584896 - 39584828
Alignment:
| Q |
25 |
gtttgagtttgagttgttgtatgtgatgcattatatagtgtgga-aaaggtaaattggaaatgctttcc |
92 |
Q |
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| T |
39584896 |
gtttgagtttgagttgttgctagtgatgtattatatagagttgagaaaagtaaattggaaatgctttcc |
39584828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 39574603 - 39574545
Alignment:
| Q |
165 |
ttgtgctttttgtgaatatattaataccatcttaatcttaaaccatgcacgtgagattgt |
224 |
Q |
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| T |
39574603 |
ttgtgctttttgtgaatattttaataccaaattaatcttaaa-catgcacatcagattgt |
39574545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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