View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_23 (Length: 244)
Name: NF2028_low_23
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_23 |
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| [»] scaffold0862 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 13010742 - 13010979
Alignment:
| Q |
1 |
catagtgtcggtcttgtcctcgtataactttaagtttcgttttcgccaaagactccatgttgtcattgaaaatgtgattagttgagatgtgttaagatgt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13010742 |
catagtctcggtcttgtcctcgtataactttaagtttcgttttcgccaaagactccatgttgtcattgcaaatgtgattagttgagatgtgttaagatgt |
13010841 |
T |
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| Q |
101 |
tgccacatacgaacaaatacatcttgaaaaccttcgacatcaaccataaaactttccaaagttgtccacatgttaaatttcctccaaacaacaatacaat |
200 |
Q |
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||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13010842 |
tgccacatacgaacaaatacatcctaaaaaccttcaacatcaaccataaaacttttcaaagttgtccacatgttaaatttcctccaaacaacaatacaat |
13010941 |
T |
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| Q |
201 |
ttgcacaatcaaaaaataaatgccagttgtattctgtg |
238 |
Q |
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| T |
13010942 |
ttgcacaatcaagaaataaatgctagttctattatgtg |
13010979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0862 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0862
Description:
Target: scaffold0862; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 4255 - 4019
Alignment:
| Q |
2 |
atagtgtcggtcttgtcctcgtataactttaagtttcgttttcgccaaagactccatgttgtcattgaaaatgtgattagttgagatgtgttaagatgtt |
101 |
Q |
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| T |
4255 |
atagtctcggtcttgtcttcccctaactttaagtttcattttcgccaaagactccatgttgtcattgcaaatgtgattagttgagatgtgttaagatgtt |
4156 |
T |
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| Q |
102 |
gccacatacgaacaaatacatcttgaaaaccttcgacatcaaccataaaactttccaaagttgtccacatgttaaatttcctccaaacaacaatacaatt |
201 |
Q |
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| T |
4155 |
gccacatacgaacaaataaatcttgaaaaccttcggcatcaaccatcaaactttccaaagttgtgcacatgtttattttcctccaaacagcaatactatc |
4056 |
T |
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| Q |
202 |
tgcacaatcaaaaaataaatgccagttgtattctgtg |
238 |
Q |
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| T |
4055 |
tgaacaatcaagaaatagatgacaattgtattttgtg |
4019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29575989 - 29576098
Alignment:
| Q |
1 |
catagtgtcggtcttgtcctcgtataactttaagtttcgttttcgccaaagactccatgttgtcattgaaaatgtgattagttgagatgtgttaagatgt |
100 |
Q |
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|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||| |
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| T |
29575989 |
catagtctcggtcttgtcctcccataactttaagttttgttttcgccaaagaatccatgttgtcatggcaaatgtgattagttgagatgtgtttagatgc |
29576088 |
T |
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| Q |
101 |
tgccacatac |
110 |
Q |
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| T |
29576089 |
taccacatac |
29576098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 18588296 - 18588363
Alignment:
| Q |
1 |
catagtgtcggtcttgtcctcgtataactttaagtttcgttttcgccaaagactccatgttgtcattg |
68 |
Q |
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|||||| |||||||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
18588296 |
catagtctcggtcttgtcctcccatagctttaagtttcgttttcgccagagactgcatgttgtcattg |
18588363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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