View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_27 (Length: 221)
Name: NF2028_low_27
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 36021533 - 36021667
Alignment:
| Q |
70 |
gactcatatgatcctgatattatattagttatttcctgcatnnnnnnntaaattgttacgttcaaaatattgtaagacaattatactgtcaaccaattat |
169 |
Q |
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| T |
36021533 |
gactcatatgatcctgagattatattagttatttcctgcataaaaaaataaatcgttacgttcaaaatattgtaaaacaattacacggtcaaccaattat |
36021632 |
T |
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| Q |
170 |
atttctttcgatcattaaaagactttgacttttatc |
205 |
Q |
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| T |
36021633 |
a-ttctttcgatcattaaaagactttgactcttatc |
36021667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 36021498 - 36021537
Alignment:
| Q |
19 |
actattttttgcggtttatttgttttcttatacaagactc |
58 |
Q |
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| T |
36021498 |
actattttttgcggtttatttgttttcttatacaagactc |
36021537 |
T |
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