View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2028_low_28 (Length: 212)
Name: NF2028_low_28
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2028_low_28 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1097 - 901
Alignment:
| Q |
1 |
catgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataacttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1097 |
catgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataacttt |
998 |
T |
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| Q |
101 |
gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgtt |
197 |
Q |
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| T |
997 |
gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacatgtt |
901 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 33878856 - 33879052
Alignment:
| Q |
1 |
catgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataacttt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878856 |
catgcggagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataacttt |
33878955 |
T |
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| Q |
101 |
gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacatgtt |
197 |
Q |
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| T |
33878956 |
gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacatgtt |
33879052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 13869476 - 13869647
Alignment:
| Q |
1 |
catgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataacttt |
100 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13869476 |
catgtagagattgtttctaaatcatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattctattaaaatagttagttttaataacttt |
13869575 |
T |
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| Q |
101 |
gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
172 |
Q |
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| T |
13869576 |
gcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgagatatggtggctgaatg |
13869647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 27641144 - 27641268
Alignment:
| Q |
73 |
tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
27641144 |
tattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgacatatggtgggtgaatg |
27641243 |
T |
|
| Q |
173 |
nnnnnnnaaggttgatgaacatgtt |
197 |
Q |
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|||||||||||||||||| |
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| T |
27641244 |
tttttttaaggttgatgaacatgtt |
27641268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29735530 - 29735328
Alignment:
| Q |
1 |
catgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataactt- |
99 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
29735530 |
catgtagagattgtttctaaaccatactgtattgggtgttattgcaatccaatcgagcaatgggttaaattctattaaaatagttagttttaataacttt |
29735431 |
T |
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| Q |
100 |
-----tgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttgatgaacat |
194 |
Q |
| |
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|||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29735430 |
ttgtatgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatggtggctgaatgtttttttaaggttgatgaacat |
29735331 |
T |
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| Q |
195 |
gtt |
197 |
Q |
| |
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||| |
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| T |
29735330 |
gtt |
29735328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 49851241 - 49851072
Alignment:
| Q |
6 |
agagattgtttctaaaccatgctgtattgggtgttatt---gcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataactttgc |
102 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49851241 |
agagattgtttctaaatcatgctgtattgggtgttattattgcaatccaattgagcaatgggtcaaattctattaaaatagttagttttaataactttgc |
49851142 |
T |
|
| Q |
103 |
atttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg |
172 |
Q |
| |
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||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
49851141 |
atttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatgatggccgaatg |
49851072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 38460700 - 38460749
Alignment:
| Q |
87 |
gttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaat |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38460700 |
gttttaataactttgcatttggaaattcaaatctcttgaaaggttgaaat |
38460749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38460663 - 38460702
Alignment:
| Q |
1 |
catgcagagattgtttctaaaccatgctgtattgggtgtt |
40 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
38460663 |
catgcagagattgtttctaaaccatgttgtattgggtgtt |
38460702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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