View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2028_low_3 (Length: 556)

Name: NF2028_low_3
Description: NF2028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2028_low_3
NF2028_low_3
[»] chr3 (13 HSPs)
chr3 (10-153)||(23222147-23222281)
chr3 (417-545)||(23231328-23231456)
chr3 (202-300)||(8936054-8936152)
chr3 (431-545)||(23235220-23235334)
chr3 (205-274)||(43178610-43178679)
chr3 (201-273)||(1294907-1294979)
chr3 (198-273)||(42388741-42388816)
chr3 (198-272)||(36563060-36563134)
chr3 (194-274)||(50175353-50175433)
chr3 (202-269)||(26841307-26841373)
chr3 (198-269)||(36545183-36545254)
chr3 (198-272)||(42411037-42411111)
chr3 (202-268)||(52397399-52397465)
[»] chr5 (13 HSPs)
chr5 (179-323)||(21067598-21067743)
chr5 (179-322)||(28988341-28988486)
chr5 (201-272)||(19187144-19187215)
chr5 (203-273)||(39753317-39753387)
chr5 (194-269)||(38282494-38282569)
chr5 (199-272)||(36603697-36603770)
chr5 (194-269)||(1179945-1180020)
chr5 (224-300)||(14122928-14123004)
chr5 (201-298)||(24233180-24233277)
chr5 (198-316)||(36974030-36974148)
chr5 (198-249)||(6677086-6677137)
chr5 (198-248)||(12383956-12384006)
chr5 (200-272)||(39031668-39031739)
[»] chr1 (10 HSPs)
chr1 (194-323)||(45484990-45485119)
chr1 (179-273)||(32022615-32022709)
chr1 (201-323)||(48611679-48611802)
chr1 (198-323)||(19940549-19940674)
chr1 (179-272)||(34663092-34663185)
chr1 (198-269)||(4941199-4941270)
chr1 (198-272)||(1408620-1408694)
chr1 (194-269)||(40605156-40605228)
chr1 (180-255)||(48768286-48768361)
chr1 (198-272)||(46289803-46289877)
[»] chr8 (8 HSPs)
chr8 (198-321)||(40995773-40995897)
chr8 (179-323)||(9799200-9799345)
chr8 (179-324)||(7222798-7222939)
chr8 (198-300)||(15111845-15111947)
chr8 (202-269)||(45397512-45397578)
chr8 (198-272)||(12000143-12000217)
chr8 (208-274)||(885706-885774)
chr8 (194-274)||(27415255-27415335)
[»] chr4 (9 HSPs)
chr4 (198-269)||(27756471-27756542)
chr4 (200-323)||(19328824-19328948)
chr4 (198-269)||(3427867-3427938)
chr4 (200-274)||(3913655-3913729)
chr4 (211-269)||(25474657-25474715)
chr4 (198-269)||(43159856-43159927)
chr4 (211-272)||(4687364-4687425)
chr4 (205-269)||(20032924-20032989)
chr4 (205-261)||(46871305-46871361)
[»] scaffold0272 (1 HSPs)
scaffold0272 (179-319)||(6089-6230)
[»] chr2 (10 HSPs)
chr2 (201-272)||(9521066-9521137)
chr2 (200-321)||(16634422-16634544)
chr2 (205-269)||(3037421-3037485)
chr2 (179-332)||(27322731-27322882)
chr2 (194-268)||(6983185-6983259)
chr2 (200-273)||(9116404-9116477)
chr2 (222-273)||(15371435-15371486)
chr2 (199-240)||(24138011-24138052)
chr2 (198-255)||(25627402-25627459)
chr2 (286-322)||(35501506-35501542)
[»] chr7 (6 HSPs)
chr7 (179-274)||(30486950-30487045)
chr7 (201-273)||(47903887-47903957)
chr7 (198-269)||(42468949-42469020)
chr7 (198-272)||(37720555-37720629)
chr7 (198-272)||(28710392-28710466)
chr7 (202-274)||(15972134-15972206)
[»] scaffold0316 (1 HSPs)
scaffold0316 (198-269)||(1286-1357)
[»] chr6 (2 HSPs)
chr6 (199-269)||(17170676-17170746)
chr6 (283-323)||(7246638-7246678)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 23222281 - 23222147
Alignment:
Q  10 aaaaataattagtaaagaggttggggcagaaagcaagttggatgtcgtgggaaattaaaggcttgttctgaattagcaaaattaattagtatatgtcgtt 109  Q
    |||||||||||||||||| |||||||||| ||||| |||||||           |||||||||||||||| |||||||||| ||||||||||||||||||    
T  23222281 aaaaataattagtaaagaagttggggcaggaagcaggttggat-----------ttaaaggcttgttctggattagcaaaaataattagtatatgtcgtt 23222193  T
Q  110 ttgtttaa--tgtggacctatggatatgattgattgtataaattta 153  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||    
T  23222192 ttgtttaatgtgtggacctatggatatgattgattgtataaattta 23222147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 417 - 545
Target Start/End: Complemental strand, 23231456 - 23231328
Alignment:
Q  417 aacccttccatttcaaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatg 516  Q
    ||||||||||||  ||||| |||||||||||||||||||| | || || |||||||   | ||||||||||||| ||||| || |||||||| | |||||    
T  23231456 aacccttccattagaaaatccaaaatattgccttcttttaaaattcaaggagaatgtggttttgttaaatatggctttggctacgatcatgtgaatgatg 23231357  T
Q  517 tttacaaggtggttgctgttttttcctat 545  Q
    |||||||||||||||||||||||||||||    
T  23231356 tttacaaggtggttgctgttttttcctat 23231328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 8936152 - 8936054
Alignment:
Q  202 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 300  Q
    |||||||||||||||| ||||| |||||||  || ||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||    
T  8936152 aagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaacttccttttttaagtttccttaaccagtgcc 8936054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 431 - 545
Target Start/End: Complemental strand, 23235334 - 23235220
Alignment:
Q  431 aaaattcaaaatattgccttcttttagatttgaacgagaatgctttcttgttaaatatggatttggttaagatcatgtaattgatgtttacaaggtggtt 530  Q
    |||||||||||||||||||||||||| | || || |||||||   | | ||||||||||| ||||| || |||||||| |  |||||||||||| | |||    
T  23235334 aaaattcaaaatattgccttcttttaaaattcaaggagaatgtggtttagttaaatatggctttggctacgatcatgtgaaggatgtttacaagatcgtt 23235235  T
Q  531 gctgttttttcctat 545  Q
    |||||||||||||||    
T  23235234 gctgttttttcctat 23235220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 43178610 - 43178679
Alignment:
Q  205 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| ||||||||| ||||||||||||||    
T  43178610 tattacattgaaatttgtactgtcaacttttgaaaagtataaaaaatgttacttttattttaaaacttcc 43178679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 1294979 - 1294907
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    ||||||||||||||||||||||| ||||| || || | || |||||||| |||||||||||||||||||||||    
T  1294979 taagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaacttc 1294907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 42388741 - 42388816
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    |||||||||||  |||| |||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||||    
T  42388741 tagtaagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttcatcttaaaacttc 42388816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 36563060 - 36563134
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||||||||||  |||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  36563060 tagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 36563134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 50175353 - 50175433
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    ||||||| ||||||| ||||| |||||||||||||||||  | |||| |||||||| ||||| ||| | ||||||| ||||    
T  50175353 aatatagaaagtattgcattggaatttgtgttgtcaactcctaaaaaacataaaaattgttatttttactttaaaatttcc 50175433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 26841373 - 26841307
Alignment:
Q  202 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||| ||||||||||||||| ||||||||| | |||||| |||||||||||||| ||| | |||||||    
T  26841373 aagttttacattgaaatttgggttgtcaac-tcttaaaatcataaaaagtgttatttttactttaaaa 26841307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 36545254 - 36545183
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||||  |||| || ||||| ||||||||  | ||||||||||||||||||| ||||| |||||||    
T  36545254 tagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaa 36545183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 42411037 - 42411111
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||||||||| ||||| || ||| |||||||| |||| |||| |||||||| ||||| ||| || |||||||||    
T  42411037 tagtaagtattgcattggaacttgcgttgtcaagttttcaaaaacataaaaaatgttatttttatcttaaaactt 42411111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 52397399 - 52397465
Alignment:
Q  202 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 268  Q
    ||||||||||||  |||||||||||||||||| | ||||| ||||||  || || ||||||||||||    
T  52397399 aagtattacattagaatttgtgttgtcaacttctaaaaagtataaaagttgatattttcattttaaa 52397465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 21067598 - 21067743
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 278  Q
    |||||||| ||||  ||| |||||||||||||||||||| ||||||||||| || || |||||||||||||||  |||||||||||||||||||||        
T  21067598 ctggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttcctttt 21067697  T
Q  279 nnnagtttccttaaccagtgcctcgga-gcaccggttaacatgacc 323  Q
       ||||||||||||||||||  |||| ||| ||||||||||||||    
T  21067698 ttgagtttccttaaccagtgcaccggaggcatcggttaacatgacc 21067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 322
Target Start/End: Complemental strand, 28988486 - 28988341
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcata--aaaagtgttactttcattttaaaacttccnn 276  Q
    |||||||| ||||  ||| | |||| |||||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||||||| ||||      
T  28988486 ctggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaatttcctt 28988387  T
Q  277 nnnnnagtttccttaaccagtgcctcggagcaccggttaacatgac 322  Q
         ||||||||||||||||||| ||  |||  ||||||||||||    
T  28988386 tttttagtttccttaaccagtgccccgcggcaatggttaacatgac 28988341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 19187144 - 19187215
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||| |||||||||||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||    
T  19187144 taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt 19187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 39753387 - 39753317
Alignment:
Q  203 agtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    ||||||||||||||| ||||| |||||||| || ||||||||||||||| |||||||||||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaacttc 39753317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 38282494 - 38282569
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||| ||| ||||||||| |||||||||||||||||| |||||||  ||||||||||||| |||||||||||||    
T  38282494 aatataataaatattacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaa 38282569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 36603770 - 36603697
Alignment:
Q  199 agtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||||||||| ||||| || |||||||||||||| || |||| |||||||||||| ||||||||||||||||||    
T  36603770 agtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaactt 36603697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 194 - 269
Target Start/End: Original strand, 1179945 - 1180020
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||| |||||||||||||||| || |||||||||||| | |||| |||||||||||||| ||| |||||||||    
T  1179945 aatatagaaagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaa 1180020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 14122928 - 14123004
Alignment:
Q  224 ttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 300  Q
    ||||||||| || ||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||    
T  14122928 ttgtcaactattcaaaagcatataaagtgttactttcattttaaaacttccttcttttagtttccttaaccagtgcc 14123004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 24233180 - 24233277
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg 298  Q
    |||||||| ||||| || ||||| ||||||||||| ||||  |||||||||||||||||||| || ||||||||       |||||||||||||||||    
T  24233180 taagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaacttcctttttttagtttccttaaccagtg 24233277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 36974148 - 36974030
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 297  Q
    |||||| |||| ||||  || |||||||||||||| || |||| ||||||| |||||| ||||||||||||| ||||       ||||| |||| |||||    
T  36974148 tagtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaatttccttttttaagttt-cttatccagt 36974050  T
Q  298 gcctcgga-gcaccggttaa 316  Q
    |||||||| |||||||||||    
T  36974049 gcctcggaggcaccggttaa 36974030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 6677086 - 6677137
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaa 249  Q
    |||||||| ||| ||||||||||||||| |||||| || |||||||||||||    
T  6677086 tagtaagttttatattgaaatttgtgttctcaactcttcaaaagcataaaaa 6677137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 12384006 - 12383956
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaa 248  Q
    |||||||||||  ||||||||||||||||||||||  | ||||||||||||    
T  12384006 tagtaagtattgaattgaaatttgtgttgtcaactcctcaaaagcataaaa 12383956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 39031668 - 39031739
Alignment:
Q  200 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||| ||||||||| |||||| || |||||| | || |||| |||||||| | ||||||||||||||||||||    
T  39031668 gtaaatattacattaaaatttatgctgtcaattattcaaaa-cataaaaaatattactttcattttaaaactt 39031739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 194 - 323
Target Start/End: Complemental strand, 45485119 - 45484990
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaac 293  Q
    ||||||||||||||| |||||||||||||||||||||||| | |||||||||||| |||||| ||| ||||||||| |||        || |||||||||    
T  45485119 aatatagtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaatttcttttttttaggttccttaac 45485020  T
Q  294 cagtgcctcggagcaccggttaacatgacc 323  Q
    ||||||| || |||||||||||||||||||    
T  45485019 cagtgccccgaagcaccggttaacatgacc 45484990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 32022709 - 32022615
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    |||||||| ||||  ||| | |||||||||||||||||| ||||  ||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  32022709 ctggttaaggagtcaaatgtggtaagtattacattgaaaattgtactgtcaactttttaaaagtataaaaagtattacttttattttaaaacttc 32022615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 48611802 - 48611679
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgcc 300  Q
    |||||| ||||||| || ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||  |       |||||||||||||||||||    
T  48611802 taagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaactatctttttttagtttccttaaccagtgcc 48611703  T
Q  301 tcggag-caccggttaacatgacc 323  Q
     || || |||||||||||||||||    
T  48611702 ccgtagacaccggttaacatgacc 48611679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 323
Target Start/End: Complemental strand, 19940674 - 19940549
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 297  Q
    ||||||||||| |||||||| || || ||||||||  | ||||||||||||||||||| ||||| |||||||||| |       ||||||||||||||||    
T  19940674 tagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc-ctttttagtttccttaaccagt 19940576  T
Q  298 gcctc-ggagcaccggttaacatgacc 323  Q
    ||| | || ||||||||||||||||||    
T  19940575 gccccgggggcaccggttaacatgacc 19940549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 34663092 - 34663185
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||||||| ||||  ||| | |||||||||  |||| || ||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  34663092 ctggttaaggagtcaaatgtggtaagtattgtattggaacttgtactgtcaacttttcaaaagtataaaaagtgttactttcattttaaaactt 34663185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 4941270 - 4941199
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||| |||| |||||||| ||||||||||||||  | ||||||||||||||||||| ||| |||||||||    
T  4941270 tagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 1408620 - 1408694
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||||| | |||||||| || |||||||||||||| || |||| |||||||||| ||| ||||||||||||||||    
T  1408620 tagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt 1408694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 269
Target Start/End: Complemental strand, 40605228 - 40605156
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||||||||| |||||||||| |||||   |||| | |||| |||||||||||||| |||||||||||||    
T  40605228 aatatagtaagtattatattgaaatttctgttg---acttctcaaaaacataaaaagtgttaatttcattttaaaa 40605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 48768286 - 48768361
Alignment:
Q  180 tggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgtta 255  Q
    |||||||||| |  |||||||||  ||||| |||| || |||||||||||||| |||||||| |||||||||||||    
T  48768286 tggttaaagaatcaaatatagtagatattatattggaacttgtgttgtcaactctttaaaagtataaaaagtgtta 48768361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 46289877 - 46289803
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||||||||| ||||| || || || |||||||  || |||| |||||||||||||| ||||| ||||||||||    
T  46289877 tagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaactt 46289803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 198 - 321
Target Start/End: Complemental strand, 40995897 - 40995773
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 297  Q
    ||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||       |||||| |||||| ||    
T  40995897 tagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttccttttcttagtttcattaaccggt 40995798  T
Q  298 gcctcgga-gcaccggttaacatga 321  Q
    ||||| || |||| |||||||||||    
T  40995797 gcctcagaggcactggttaacatga 40995773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 9799345 - 9799200
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 278  Q
    |||||||| ||||  ||| | ||||||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||||||| |||| |        
T  9799345 ctggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgttacctttattttaagactttcaatt 9799246  T
Q  279 nnnagtttccttaaccagtgcctc-ggagcaccggttaacatgacc 323  Q
       ||||||||||||||||||| | || |||| |||||||||||||    
T  9799245 tttagtttccttaaccagtgccacgggggcactggttaacatgacc 9799200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 7222939 - 7222798
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 278  Q
    |||||||| ||||  |||||| ||| ||||||||||||||||||| |||  ||| || |||| |||||||||||||||||| ||||||||| || |        
T  7222939 ctggttaaggagttaaatataataaatattacattgaaatttgtgctgt--actattcaaaaacataaaaagtgttacttttattttaaaattttc--tt 7222844  T
Q  279 nnnagtttccttaaccagtgcctcggagcaccggttaacatgacct 324  Q
       |||||||||||| |||| || |  |||||||||||||||||||    
T  7222843 tttagtttccttaactagtgtctggatgcaccggttaacatgacct 7222798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 15111947 - 15111845
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagt 297  Q
    |||||||| ||| ||| ||| ||||||||||||||  | ||||  ||||||||||||| ||||||||||||| |||        ||||||||||||||||    
T  15111947 tagtaagttttatattaaaacttgtgttgtcaactcctaaaaaatataaaaagtgttattttcattttaaaatttcttttttttagtttccttaaccagt 15111848  T
Q  298 gcc 300  Q
    |||    
T  15111847 gcc 15111845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 45397512 - 45397578
Alignment:
Q  202 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||||||||||||||| |||||||||||| | |||||  | |||||||||| ||| |||||||||    
T  45397512 aagtattacattgaaatttttgttgtcaacttctaaaaag-tttaaaagtgttatttttattttaaaa 45397578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 12000217 - 12000143
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||||||| || ||||| |||||||| ||||||| | | ||||||||||||| | ||| ||||| ||||||||||    
T  12000217 tagtaagtgttgcattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaactt 12000143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 885706 - 885774
Alignment:
Q  208 tacattgaaatttgtgttgtcaactttttaaaagcat--aaaaagtgttactttcattttaaaacttcc 274  Q
    ||||||| |||||||||||||||||  ||||||| ||  ||||| ||||| ||||||||||||| ||||    
T  885706 tacattggaatttgtgttgtcaactccttaaaagaataaaaaaaatgttattttcattttaaaatttcc 885774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 27415335 - 27415255
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    ||||||| ||| |||||||||||| || |||||||||||| | ||||  || |||||||||| ||| | ||||||| ||||    
T  27415335 aatataggaagcattacattgaaacttatgttgtcaacttctcaaaaatatcaaaagtgttatttttactttaaaatttcc 27415255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 27756471 - 27756542
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||    
T  27756471 tagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 200 - 323
Target Start/End: Original strand, 19328824 - 19328948
Alignment:
Q  200 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtg- 298  Q
    ||||||||||||||| || ||||| | |||||| || ||||| |||||||||||||||||||||||||||||||        |||||||||||||||||     
T  19328824 gtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaacttcatttttttagtttccttaaccagtgc 19328923  T
Q  299 cctcggagcaccggttaacatgacc 323  Q
    || ||| ||||||||||||||||||    
T  19328924 ccccggggcaccggttaacatgacc 19328948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 3427867 - 3427938
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||||  ||||||| |||||||||||||| || |||| |||||||||||||| |||||||||||||    
T  3427867 tagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 3913655 - 3913729
Alignment:
Q  200 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    ||||||||||| ||| || ||||||||| |||| || ||||| ||||||||||||||||||||||||||| ||||    
T  3913655 gtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaaattcc 3913729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 25474715 - 25474657
Alignment:
Q  211 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||    
T  25474715 attgaaatttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaa 25474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 43159856 - 43159927
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||||||| ||||| || ||||||||||||||  | |||| | |||||||||||| |||||||||||||    
T  43159856 tagtaagtattgcattggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaa 43159927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 4687425 - 4687364
Alignment:
Q  211 attgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    |||| |||||||| | ||||||| | ||||||||||||||||||| ||| | ||||||||||    
T  4687425 attggaatttgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaactt 4687364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 20032924 - 20032989
Alignment:
Q  205 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttact-ttcattttaaaa 269  Q
    |||||||||| || |||| ||||||||| || |||| |||||||||||||| | ||||||||||||    
T  20032924 tattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaa 20032989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 46871305 - 46871361
Alignment:
Q  205 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttca 261  Q
    ||||||||||||| ||||||||||||||  |  |||  |||||||||||||||||||    
T  46871305 tattacattgaaacttgtgttgtcaactcctcgaaaatataaaaagtgttactttca 46871361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 319
Target Start/End: Original strand, 6089 - 6230
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 278  Q
    |||||||| ||||  ||| ||||||||||| ||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||| |        
T  6089 ctggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaactttctttt 6188  T
Q  279 nnnagtttccttaaccagtgcctc-ggagcaccggttaacat 319  Q
       ||||||||||||| ||||| | ||| |||||||||||||    
T  6189 tttagtttccttaaccggtgcccctggaacaccggttaacat 6230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 9521137 - 9521066
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  9521137 taagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaactt 9521066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 321
Target Start/End: Original strand, 16634422 - 16634544
Alignment:
Q  200 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnnnnnagtttccttaaccagtgc 299  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||| |||  |||||||||||||        ||||||||||| ||||||    
T  16634422 gtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaacttcattttattagtttccttaatcagtgc 16634521  T
Q  300 ctcgga-gcaccggttaacatga 321  Q
      |||| ||||||||||||||||    
T  16634522 tccggaggcaccggttaacatga 16634544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 3037421 - 3037485
Alignment:
Q  205 tattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||| |||||||||||||||||  ||||||| ||||||||||||||||| |||||||||    
T  3037421 tattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaa 3037485  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 332
Target Start/End: Original strand, 27322731 - 27322882
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttccnnnn 278  Q
    |||||||| ||||  ||| | ||||||||| ||||| || ||||| |||||||| || ||||||||||||||| ||||||| |||||  |||||||        
T  27322731 ctggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttattttcgaacttcctttt 27322830  T
Q  279 nnnagtttccttaaccagtgcctcggagcaccggttaacatgacctaataaatt 332  Q
       ||||||||||||||||||| ||   ||| |||||||||||||  |||||||    
T  27322831 tttagtttccttaaccagtgccccg--acactggttaacatgaccctataaatt 27322882  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 6983259 - 6983185
Alignment:
Q  194 aatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaa 268  Q
    ||||||| ||||||||||||| || ||||| ||||||||  | ||||||||||||||||||| ||||| ||||||    
T  6983259 aatatagaaagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcactttaaa 6983185  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 9116477 - 9116404
Alignment:
Q  200 gtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    |||| |||| ||||| || ||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||||||    
T  9116477 gtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaacttc 9116404  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 15371486 - 15371435
Alignment:
Q  222 tgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    |||||| ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  15371486 tgttgttaactttttaaaaggataaaaagtgttattttcactttaaaacttc 15371435  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 24138011 - 24138052
Alignment:
Q  199 agtaagtattacattgaaatttgtgttgtcaactttttaaaa 240  Q
    ||||||||||  ||||||||||||||||||||||| ||||||    
T  24138011 agtaagtattgtattgaaatttgtgttgtcaacttcttaaaa 24138052  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 25627402 - 25627459
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgtta 255  Q
    |||||||||||  ||||||| ||||||||||||||  | |||| ||||||||||||||    
T  25627402 tagtaagtattttattgaaacttgtgttgtcaactcctcaaaaacataaaaagtgtta 25627459  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 35501506 - 35501542
Alignment:
Q  286 tccttaaccagtgcctcggagcaccggttaacatgac 322  Q
    ||||||||||||||  |||||||||||||||||||||    
T  35501506 tccttaaccagtgctccggagcaccggttaacatgac 35501542  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 30487045 - 30486950
Alignment:
Q  179 ctggttaaagagtagaatatagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    |||||||| ||||  ||| | ||||||||| ||||||||||||||  |||||||||| ||||  ||||||| ||||||||| ||||||||||||||    
T  30487045 ctggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaacttcc 30486950  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 47903957 - 47903887
Alignment:
Q  201 taagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttc 273  Q
    |||||||||||||| |||||||||||||||||  | |||| |||  ||||||||| |||||||||||||||||    
T  47903957 taagtattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaacttc 47903887  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 42469020 - 42468949
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    |||||||||||| ||||||| ||||| |||| ||| ||||| | |||||||||||||  |||||||||||||    
T  42469020 tagtaagtattaaattgaaacttgtgatgtccactctttaataacataaaaagtgttgttttcattttaaaa 42468949  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 37720629 - 37720555
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||||||||| ||||| ||  |||| ||||||||  | ||||||||||||||||||| ||||| ||||||||||    
T  37720629 tagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactt 37720555  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 28710466 - 28710392
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaactt 272  Q
    ||||||||||||||||| |||||||| ||  ||||  | |||| |||||||| ||||| ||||| ||||||||||    
T  28710466 tagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaactt 28710392  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 15972206 - 15972134
Alignment:
Q  202 aagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaacttcc 274  Q
    |||||||||||||||| |||||||||||| |  | ||||  ||||||||| ||| ||||| ||||||| ||||    
T  15972206 aagtattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaatttcc 15972134  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 1286 - 1357
Alignment:
Q  198 tagtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||||||| |||||  | ||||||||||||||  | ||||||||||||| ||||| |||||||||||||    
T  1286 tagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaa 1357  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 17170746 - 17170676
Alignment:
Q  199 agtaagtattacattgaaatttgtgttgtcaactttttaaaagcataaaaagtgttactttcattttaaaa 269  Q
    ||||||| |||||||  ||||| |||||| || |||||||||  ||||||||||||| ||| |||||||||    
T  17170746 agtaagttttacattagaatttatgttgttaattttttaaaaatataaaaagtgttatttttattttaaaa 17170676  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 7246638 - 7246678
Alignment:
Q  283 gtttccttaaccagtgcctcggagcaccggttaacatgacc 323  Q
    |||||||||||||||||| ||||||||  ||||||||||||    
T  7246638 gtttccttaaccagtgccccggagcactagttaacatgacc 7246678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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