View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20290_high_1 (Length: 659)
Name: NF20290_high_1
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20290_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 73 - 646
Target Start/End: Original strand, 37556700 - 37557279
Alignment:
| Q |
73 |
gctgcaatgatggagagtatccgaatccaaaacaaaaagggtttcaacttgacattatatatttactactcatatcaataa------gtcaaaaactatt |
166 |
Q |
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||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37556700 |
gctgcaacgttggagagtatccgagtccaaaacaaaaagggtttcaacttgacattatatatttactactcatatcaataacatagagtcaaaaactatt |
37556799 |
T |
|
| Q |
167 |
taaattcacaaactttatgtgcttgcatcttaaatattgcagtgctatgacaaatatcttcaagccgatttcaaagaggctgcaaaaagagcaggccatc |
266 |
Q |
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| T |
37556800 |
tcaattcacaaactttatgtactcgcatcttaaatattgcagtgctatgacaaatatcttcaagctgatttcaaagacgctgcaaaaagagcaggccatc |
37556899 |
T |
|
| Q |
267 |
ctgaatgggagctgcctgataatgcagggtcatctaatgacacacctgaatctacagaatttttcagatccaagggaacttaccaaacagagaaagggaa |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37556900 |
ctgaatgggagctgcctgataatgcagggtcatctaatgacacacctgaatctacagaatttttcagatccaagggaacttaccaaacagagaaagggaa |
37556999 |
T |
|
| Q |
367 |
attttttcttacatggtattctaacaaattgcttacacatggtgatgaaatcttggacgaagccaacaaagtattcctcggttgcaaagtgaagttagca |
466 |
Q |
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| T |
37557000 |
attttttcttacatggtattctaacaaattgcttacacatggtgatgaaatcttggacgaagccaacaaagtattcctcggttgcaaagtgaagttagca |
37557099 |
T |
|
| Q |
467 |
gcaaaagtaaactctcaaatattcagttctgttatttgaacaacagtgattgaacaacttttgcgacagaaatttaagatgttaatgcagttcaaattgg |
566 |
Q |
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| T |
37557100 |
gcaaaagtaaactctcaaatattcagttctgttatttgaacaacagtgattgaacaacttttgcgacagaaatttaagatgttaatgcagttcaaattgg |
37557199 |
T |
|
| Q |
567 |
tggttaattacgttcaatagatgattaatggatatatataccaagtgccaaatttattaacaattaacggaacttattga |
646 |
Q |
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| T |
37557200 |
tggttagttacgttcaatagatgattaatggatatatataccaagtgccaaatttactaacaattaacggaacttattga |
37557279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 602
Target Start/End: Complemental strand, 14301121 - 14301086
Alignment:
| Q |
567 |
tggttaattacgttcaatagatgattaatggatata |
602 |
Q |
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| T |
14301121 |
tggttaattacgttcaatagatgattaatgaatata |
14301086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 36292590 - 36292635
Alignment:
| Q |
557 |
ttcaaattggtggttaattacgttcaatagatgattaatggatata |
602 |
Q |
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| T |
36292590 |
ttcaaataggtagttaattacgttcagtagatggttaatggatata |
36292635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 1768290 - 1768334
Alignment:
| Q |
557 |
ttcaaattggtggttaattacgttcaatagatgattaatggatat |
601 |
Q |
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| T |
1768290 |
ttcaaataggtagttaattacattcaattgatgattaatggatat |
1768334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 12908380 - 12908431
Alignment:
| Q |
548 |
ttaatgcagttcaaattggtggttaattacgttcaatagatgattaatggat |
599 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||| ||||||||| |
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| T |
12908380 |
ttaaggcagttcaaatatgtggttaagtacgttcaatagatggttaatggat |
12908431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 15503621 - 15503731
Alignment:
| Q |
356 |
gagaaagggaaattttttcttacatggtattctaacaaattgcttacacatggtgatgaaatcttggacgaagccaacaaagtattcctcggttgcaaag |
455 |
Q |
| |
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|||||||||||||| || || || |||||||||||| ||||||| | ||||||||| ||||| | || ||||| || |||| ||||| || || |||| |
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| T |
15503621 |
gagaaagggaaattcttcctaacttggtattctaaccaattgctgaatcatggtgatcaaatcctagatgaagctaataaagctttcctgggatgtaaag |
15503720 |
T |
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| Q |
456 |
tgaagttagca |
466 |
Q |
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| T |
15503721 |
tcaagttagca |
15503731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 595
Target Start/End: Original strand, 2382163 - 2382204
Alignment:
| Q |
554 |
cagttcaaattggtggttaattacgttcaatagatgattaat |
595 |
Q |
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| T |
2382163 |
cagttcaaataggtcgttaattacgttcagtagatgattaat |
2382204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 596
Target Start/End: Complemental strand, 21143820 - 21143771
Alignment:
| Q |
547 |
gttaatgcagttcaaattggtggttaattacgttcaatagatgattaatg |
596 |
Q |
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| T |
21143820 |
gttaatgaagttcaaaattgtggttaattacgttcagtggatgattaatg |
21143771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 596
Target Start/End: Original strand, 9866577 - 9866617
Alignment:
| Q |
556 |
gttcaaattggtggttaattacgttcaatagatgattaatg |
596 |
Q |
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||||||| | |||||||||||||||||||||||| |||||| |
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| T |
9866577 |
gttcaaaattgtggttaattacgttcaatagatggttaatg |
9866617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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