View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20290_high_2 (Length: 583)

Name: NF20290_high_2
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20290_high_2
NF20290_high_2
[»] chr4 (8 HSPs)
chr4 (17-332)||(7605847-7606163)
chr4 (418-573)||(7605606-7605761)
chr4 (17-111)||(7628521-7628615)
chr4 (17-113)||(7636895-7636991)
chr4 (24-137)||(7656336-7656446)
chr4 (473-524)||(3620686-3620737)
chr4 (17-111)||(7615083-7615177)
chr4 (248-292)||(7605201-7605245)
[»] chr7 (6 HSPs)
chr7 (17-264)||(8941928-8942175)
chr7 (434-571)||(8942298-8942434)
chr7 (17-111)||(8936284-8936378)
chr7 (17-113)||(8913781-8913877)
chr7 (230-288)||(40670148-40670206)
chr7 (236-270)||(32779842-32779876)
[»] chr1 (3 HSPs)
chr1 (470-525)||(38714774-38714829)
chr1 (236-267)||(32909738-32909769)
chr1 (230-264)||(32909295-32909329)
[»] chr3 (3 HSPs)
chr3 (17-72)||(8102327-8102382)
chr3 (17-94)||(40147557-40147634)
chr3 (236-270)||(46556416-46556450)
[»] chr6 (1 HSPs)
chr6 (17-108)||(6500335-6500426)
[»] scaffold0130 (1 HSPs)
scaffold0130 (233-270)||(25253-25290)
[»] chr8 (1 HSPs)
chr8 (237-270)||(27710054-27710087)
[»] chr5 (2 HSPs)
chr5 (237-270)||(43059439-43059472)
chr5 (230-270)||(2165925-2165965)
[»] chr2 (1 HSPs)
chr2 (236-268)||(18901368-18901400)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 7606163 - 7605847
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7606163 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcggcttc 7606064  T
Q  117 aaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatgacattcaagtctcttttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||     
T  7606063 aaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataagtgtatgacgttcaagtctcttttt 7605964  T
Q  217 agtatattttgataaagaagaatgttagggtcacaccctctaacacactccaatggaaacttgccatctcattcac-nnnnnnnaagttacttacctgct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||    
T  7605963 agtatattttgataaagaagaatgttagggtcacaccctctaacacactccagtggaaacttgccatctcattcacttttttttaagttacttacctgct 7605864  T
Q  316 gaccagttacacaagtt 332  Q
    |||||||||||||||||    
T  7605863 gaccagttacacaagtt 7605847  T

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Target: chr4; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 418 - 573
Target Start/End: Complemental strand, 7605761 - 7605606
Alignment:
Q  418 ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7605761 ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt 7605662  T
Q  518 tttgttgcnnnnnnnccaaatataaattgtttctcaatattgattctaagcctttg 573  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  7605661 tttgttgctttttttccaaatataaattgtttctcaatattgattctaagcctttg 7605606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 7628615 - 7628521
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca 111  Q
    ||||||||||||||||||| | |||||||||||| || |||||||||||||||||| |||||| || ||  ||||||| ||| ||||||||||||    
T  7628615 aggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca 7628521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 7636991 - 7636895
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagc 113  Q
    ||||||||| ||||||||||| |||||||||    || ||||||||| |||||||| ||||||  ||||||||||||| ||| ||||||||||||||    
T  7636991 aggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagc 7636895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 7656336 - 7656446
Alignment:
Q  24 attgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaaggttt 123  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||  | ||||||||| | ||   ||||||||||||| ||||| |||    
T  7656336 attgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggatatggt---caactaatgcagcgtcaagattt 7656432  T
Q  124 gtaaaatcgatttg 137  Q
    | ||| | ||||||    
T  7656433 gaaaacttgatttg 7656446  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 524
Target Start/End: Original strand, 3620686 - 3620737
Alignment:
Q  473 cactctcttgtggggttccatctctagttttacttgagtttcatttttgttg 524  Q
    |||| |||| ||||||||||||||||||||| |||| |||||||||||||||    
T  3620686 cactttcttatggggttccatctctagtttttcttgggtttcatttttgttg 3620737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 7615177 - 7615083
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca 111  Q
    ||||||||| || |||||||| |||||| |  |  || |||||||||||||||||| |||||| || ||||||||||| | | ||||||||||||    
T  7615177 aggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgca 7615083  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 7605201 - 7605245
Alignment:
Q  248 cacaccctctaacacactccaatggaaacttgccatctcattcac 292  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||    
T  7605201 cacaccctttaacacactccaatggaaacttatcatatcattcac 7605245  T

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Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 8941928 - 8942175
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttc 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  8941928 aggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagcttc 8942027  T
Q  117 aaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatgacattcaagtctcttttc 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  8942028 aaggtttgtaaaatcgatttgttagcatatttgtccagatgcttaaatttgtattttggatataactatgaataactttatgatgttcaagtctcttttc 8942127  T
Q  217 agtatattttgataaagaagaatgttagggtcacaccctctaacacac 264  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||||    
T  8942128 agtatattttgataaagatgaatgctacggtcacaccctctaacacac 8942175  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 434 - 571
Target Start/End: Original strand, 8942298 - 8942434
Alignment:
Q  434 cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgcnnnnnnnc 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |    
T  8942298 cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgcgtttcatttttgttg-tttttttc 8942396  T
Q  534 caaatataaattgtttctcaatattgattctaagcctt 571  Q
    |  || ||||||||||||||||||||||||||||||||    
T  8942397 ctgatctaaattgtttctcaatattgattctaagcctt 8942434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 8936284 - 8936378
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca 111  Q
    ||||||||||||||||||||| |||||||| ||  || |||||||||||||||||| |||||| || ||||||||||| | | ||||||||||||    
T  8936284 aggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgca 8936378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 8913781 - 8913877
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagc 113  Q
    ||||| ||| ||||||||||| |||||||||    || ||||||||| |||||||| ||||||  ||||||||||||| ||| ||||||||||||||    
T  8913781 aggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagc 8913877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 40670206 - 40670148
Alignment:
Q  230 aaagaagaatgttagggtcacaccctctaacacactccaatggaaacttgccatctcat 288  Q
    ||||| ||||| ||||||||||||||||||||||||| |||   |||||||||||||||    
T  40670206 aaagaggaatgatagggtcacaccctctaacacactcaaattataacttgccatctcat 40670148  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 32779876 - 32779842
Alignment:
Q  236 gaatgttagggtcacaccctctaacacactccaat 270  Q
    ||||| |||||||||||||||||||||||||||||    
T  32779876 gaatgctagggtcacaccctctaacacactccaat 32779842  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 38714774 - 38714829
Alignment:
Q  470 tcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgc 525  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  38714774 tcacactctcttgtggggttctatctttagttttacttgagtttcatttttgttgc 38714829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 32909769 - 32909738
Alignment:
Q  236 gaatgttagggtcacaccctctaacacactcc 267  Q
    ||||||||||||||||||||||||||||||||    
T  32909769 gaatgttagggtcacaccctctaacacactcc 32909738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 32909295 - 32909329
Alignment:
Q  230 aaagaagaatgttagggtcacaccctctaacacac 264  Q
    ||||| |||||||||||||||||||||||||||||    
T  32909295 aaagatgaatgttagggtcacaccctctaacacac 32909329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 8102382 - 8102327
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa 72  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  8102382 aggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa 8102327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 40147557 - 40147634
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgt 94  Q
    |||||| || ||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||   | |||||||||||    
T  40147557 aggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgt 40147634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 46556416 - 46556450
Alignment:
Q  236 gaatgttagggtcacaccctctaacacactccaat 270  Q
    |||||||||| ||||||||||||||||||||||||    
T  46556416 gaatgttaggatcacaccctctaacacactccaat 46556450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 6500426 - 6500335
Alignment:
Q  17 aggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaat 108  Q
    ||||||||| ||||||||||| |||||||||||||||  |||||| |||||| |   ||||||  ||||||||||||  ||| |||||||||    
T  6500426 aggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaactaat 6500335  T

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Target: scaffold0130 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 25290 - 25253
Alignment:
Q  233 gaagaatgttagggtcacaccctctaacacactccaat 270  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  25290 gaagaatgctagggtcacaccctctaacacattccaat 25253  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 27710087 - 27710054
Alignment:
Q  237 aatgttagggtcacaccctctaacacactccaat 270  Q
    |||| |||||||||||||||||||||||||||||    
T  27710087 aatgctagggtcacaccctctaacacactccaat 27710054  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 43059472 - 43059439
Alignment:
Q  237 aatgttagggtcacaccctctaacacactccaat 270  Q
    |||||||||||||||||||| |||||||||||||    
T  43059472 aatgttagggtcacaccctccaacacactccaat 43059439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 2165925 - 2165965
Alignment:
Q  230 aaagaagaatgttagggtcacaccctctaacacactccaat 270  Q
    ||||| ||||| ||||||||||||||||||||||| |||||    
T  2165925 aaagaggaatgctagggtcacaccctctaacacacaccaat 2165965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 18901400 - 18901368
Alignment:
Q  236 gaatgttagggtcacaccctctaacacactcca 268  Q
    ||||| |||||||||||||||||||||||||||    
T  18901400 gaatgctagggtcacaccctctaacacactcca 18901368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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