View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20290_high_4 (Length: 394)

Name: NF20290_high_4
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20290_high_4
NF20290_high_4
[»] chr8 (9 HSPs)
chr8 (18-385)||(31689122-31689489)
chr8 (227-282)||(35029467-35029522)
chr8 (234-282)||(9511027-9511075)
chr8 (227-282)||(3912901-3912956)
chr8 (226-316)||(12340779-12340869)
chr8 (228-281)||(12332101-12332154)
chr8 (234-282)||(6245372-6245420)
chr8 (226-282)||(15439413-15439469)
chr8 (226-282)||(15530717-15530773)
[»] chr5 (7 HSPs)
chr5 (45-280)||(34338130-34338365)
chr5 (233-282)||(23923094-23923143)
chr5 (226-278)||(32018631-32018683)
chr5 (74-148)||(16907665-16907739)
chr5 (226-259)||(42039544-42039577)
chr5 (226-282)||(16907531-16907587)
chr5 (234-282)||(18891752-18891800)
[»] chr2 (4 HSPs)
chr2 (207-282)||(7300920-7300995)
chr2 (226-281)||(33281334-33281389)
chr2 (226-266)||(18635163-18635203)
chr2 (246-282)||(37445346-37445382)
[»] chr7 (7 HSPs)
chr7 (209-282)||(33821341-33821414)
chr7 (228-282)||(30573183-30573237)
chr7 (45-282)||(23887329-23887566)
chr7 (45-282)||(23898505-23898742)
chr7 (36-127)||(20349364-20349455)
chr7 (233-282)||(47923940-47923989)
chr7 (226-282)||(8753227-8753283)
[»] chr6 (2 HSPs)
chr6 (205-281)||(8384452-8384528)
chr6 (233-282)||(34180177-34180226)
[»] chr1 (5 HSPs)
chr1 (227-282)||(52470022-52470077)
chr1 (42-130)||(28358287-28358375)
chr1 (18-66)||(13867464-13867512)
chr1 (226-282)||(26805206-26805262)
chr1 (18-66)||(34352884-34352932)
[»] chr4 (6 HSPs)
chr4 (18-66)||(43516379-43516427)
chr4 (226-282)||(52617703-52617759)
chr4 (226-281)||(43273656-43273711)
chr4 (86-160)||(48497751-48497825)
chr4 (226-303)||(2071764-2071841)
chr4 (226-282)||(48497891-48497947)
[»] scaffold0003 (1 HSPs)
scaffold0003 (228-282)||(367250-367304)
[»] chr3 (2 HSPs)
chr3 (228-282)||(52250965-52251019)
chr3 (234-282)||(34829664-34829712)
[»] scaffold0189 (1 HSPs)
scaffold0189 (226-279)||(6336-6389)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 31689122 - 31689489
Alignment:
Q  18 gatggtgtaggcgttgtagaggaaggctggtttgcagagagggtgtcgagaagtgttgggaatggatcaaatactatcttttggttggataggtggttag 117  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  31689122 gatggtgtaggcgttgtagaggagagctggtttgcagagagggtgtcgagaagtgttggaaatggatcaaatactctcttttggttggataggtggttag 31689221  T
Q  118 gtgatattcctttgtgtgcatggtttagccgcctctttgaattgacgacaaataagccgagtacggtggcagaaatgtttgccttaagctgggaggaagg 217  Q
     |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  31689222 atgatattcctttgtgtacacggtttagccgcctctttgaattgacgacaaataagtcgagtacggtggcagaaatgtttgccttaaggtgggaggaagg 31689321  T
Q  218 gggtccaccgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgtacacatttacttaacgattttgatatgcagcctgaa 317  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31689322 gggtccgccgtggaggtggaagagaaggttgtgggtgtgggagcaggagatggtagtggagtgtacacatttacttaacgattttgatatgcagcctgaa 31689421  T
Q  318 tgcctgatgtatctgacaggtgacaatggaacctcgacattcaggggggctatacagtctgtgctgct 385  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  31689422 tgcctgatgtatctgacaggtggcaatggaacctcgacattcaggggggctatacagtgtgtggtgct 31689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 35029522 - 35029467
Alignment:
Q  227 gtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||||||  ||||||||||||||||| |||||||| ||| ||||||||    
T  35029522 gtggaggtggaggagggggttgtgggtgtgggaggaggagatgttaggggagtgta 35029467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 9511075 - 9511027
Alignment:
Q  234 tggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||||||| ||||||||||| |||||||| ||| ||||||||    
T  9511075 tggaggagaaggttgagggtgtgggaggaggagatgttagaggagtgta 9511027  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 3912901 - 3912956
Alignment:
Q  227 gtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||| ||| ||||||||||||||||| |||| ||| ||| ||||||||    
T  3912901 gtggaggtggagaagacggttgtgggtgtgggaggaggaaatgctaggggagtgta 3912956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 12340869 - 12340779
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgtacacatttacttaacgattttgatatgcagcctga 316  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| |  ||| |||||||   |||||||||||  |||||| | ||||| ||||    
T  12340869 cgtggagatggaggagaaggttgtgggagtgggaggaggagttattaggggagtgtcgccatttacttaataattttgttttgcagactga 12340779  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 12332154 - 12332101
Alignment:
Q  228 tggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgt 281  Q
    ||||||||||||||  |||||||| |||||||| |||||||| ||| |||||||    
T  12332154 tggaggtggaggagggggttgtggatgtgggaggaggagatgctaggggagtgt 12332101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 6245420 - 6245372
Alignment:
Q  234 tggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||||||| ||||||||||| |||||||| |||  |||||||    
T  6245420 tggaggagaaggttgagggtgtgggaggaggagatgttagatgagtgta 6245372  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 15439469 - 15439413
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||| |||| || ||||||| ||||||| ||||| |||| ||||||||||    
T  15439469 cgtggaggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgta 15439413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 15530773 - 15530717
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||| |||| || ||||||| ||||||| ||||| |||| ||||||||||    
T  15530773 cgtggaggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgta 15530717  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 34338365 - 34338130
Alignment:
Q  45 tggtttgcagagagggtgtcgagaagtgttgggaatggatcaaatactatcttttggttggataggtggttaggtgatattcctttgtgtgcatggttta 144  Q
    |||||| ||||||||||| | ||||  ||  || |||| || || ||| ||||||||||||||||||||||||||||| | ||||||||| |  ||||||    
T  34338365 tggttttcagagagggtggcaagaaaggtatgggatggttcgaacactttcttttggttggataggtggttaggtgatgtccctttgtgtacgcggttta 34338266  T
Q  145 gccgcctctttgaattgacgacaaataagccgagtacggtggcagaaatgtttgccttaagctgggaggaagggggtccaccgtggaggtggaggagaag 244  Q
    ||||  | ||||| ||  | || ||| || |||||| |||||| ||  ||||  |  ||  ||||| ||||||||||    ||||||| |||||||| ||    
T  34338265 gccgtttatttgacttagcaacgaatcagtcgagtatggtggctgagctgttctctctagcctggggggaagggggtgagacgtggagatggaggaggag 34338166  T
Q  245 gttgtgggtgtgggagcaggagatggtagtggagtg 280  Q
    |||||||||||||||| |||||||||||||||||||    
T  34338165 gttgtgggtgtgggaggaggagatggtagtggagtg 34338130  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 23923143 - 23923094
Alignment:
Q  233 gtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||| |||||||||||||||||| |||||||| ||| ||||||||    
T  23923143 gtggaggaggaggttgtgggtgtgggaggaggagatgttagcggagtgta 23923094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 32018683 - 32018631
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggag 278  Q
    ||||||||||||||||||||||||||| ||||||| | ||| |||||| ||||    
T  32018683 cgtggaggtggaggagaaggttgtgggcgtgggaggaagagttggtaggggag 32018631  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 16907739 - 16907665
Alignment:
Q  74 tgggaatggatcaaatactatcttttggttggataggtggttaggtgatattcctttgtgtgcatggtttagccg 148  Q
    |||| ||||||||| |||  |||||||||  ||||||||||||| |||| |||||||  || |||||||||||||    
T  16907739 tggggatggatcaagtacattcttttggtatgataggtggttagatgatgttcctttacgtacatggtttagccg 16907665  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 42039544 - 42039577
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtggga 259  Q
    ||||||| ||||||||||||||||||||||||||    
T  42039544 cgtggagttggaggagaaggttgtgggtgtggga 42039577  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 16907587 - 16907531
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||| ||||||||||  ||||||| ||||||| ||||| || ||||||||||||    
T  16907587 cgtggagttggaggagaatattgtgggcgtgggaggaggagttgatagtggagtgta 16907531  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 18891752 - 18891800
Alignment:
Q  234 tggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||| |||||||||||| ||||| |||||| | ||||||||||||    
T  18891752 tggaggaggaggttgtgggtgggggaggaggagaagttagtggagtgta 18891800  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 7300995 - 7300920
Alignment:
Q  207 tgggaggaagggggtccaccgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||||||    | ||||| ||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  7300995 tgggaggaagggggtgaggcatggagttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgta 7300920  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 33281389 - 33281334
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgt 281  Q
    ||||||| |||||||| |||||||||||||||||| |||||  |||| ||||||||    
T  33281389 cgtggagatggaggaggaggttgtgggtgtgggaggaggaggcggtattggagtgt 33281334  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 18635203 - 18635163
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggag 266  Q
    ||||||| ||||||||||| ||||||||||||||| |||||    
T  18635203 cgtggagttggaggagaagattgtgggtgtgggaggaggag 18635163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 37445382 - 37445346
Alignment:
Q  246 ttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  37445382 ttgtgggtgtgggaggaggagatgctagtggagtgta 37445346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 33821341 - 33821414
Alignment:
Q  209 ggaggaagggggtccaccgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||| |   ||||||||||||||||||| ||||||||||||||| | |||||| ||| ||||||||    
T  33821341 ggaggaagggggactggcgtggaggtggaggagaagattgtgggtgtgggaggaagagatgctagcggagtgta 33821414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 30573183 - 30573237
Alignment:
Q  228 tggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||| |||||||| |||||||||||||||||| |||||||| ||| ||||||||    
T  30573183 tggagttggaggaggaggttgtgggtgtgggaggaggagatgctaggggagtgta 30573237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 23887566 - 23887329
Alignment:
Q  45 tggtttgcagagagggtgtcgagaagtgttgggaatggatcaaatactatcttttggttggataggtggttaggtgatattcctttgtgtgcatggttta 144  Q
    |||||| |||| |||||||||||||| || ||| |||||||||||||| | ||||||   || ||||||||||| ||  ||||||||||   | | ||||    
T  23887566 tggtttacagatagggtgtcgagaagggtaggggatggatcaaatactttattttggcatgacaggtggttaggagaggttcctttgtgcaaacgcttta 23887467  T
Q  145 gccgcctctttgaattgacgacaaataagccgagtacggtggcagaaatgtttgccttaagctgggaggaagggggtccaccgtggaggtggaggagaag 244  Q
      ||  | ||||| ||| || |||||||   |||||||||||| || |||    || |  | ||||||||||||||     |||||||||||||||||||    
T  23887466 ctcgtttatttgatttggcgtcaaataaattgagtacggtggctgagatgcacacccttggttgggaggaagggggagtggcgtggaggtggaggagaag 23887367  T
Q  245 gttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
      |||||||||||||| | |||||| ||| ||||||||    
T  23887366 actgtgggtgtgggaggaagagatgttagcggagtgta 23887329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 23898742 - 23898505
Alignment:
Q  45 tggtttgcagagagggtgtcgagaagtgttgggaatggatcaaatactatcttttggttggataggtggttaggtgatattcctttgtgtgcatggttta 144  Q
    |||||| |||| |||||||||||||| || ||| |||||||||||||| | ||||||   || ||||||||||| ||  ||||||||||   | | ||||    
T  23898742 tggtttacagatagggtgtcgagaagggtaggggatggatcaaatactttattttggcatgacaggtggttaggagaggttcctttgtgcaaacgcttta 23898643  T
Q  145 gccgcctctttgaattgacgacaaataagccgagtacggtggcagaaatgtttgccttaagctgggaggaagggggtccaccgtggaggtggaggagaag 244  Q
      ||  | ||||| ||| || |||||||   |||||||||||| || |||    || |  | ||||||||||||||     |||||||||||||||||||    
T  23898642 ctcgtttatttgatttggcgtcaaataaattgagtacggtggctgagatgcacacccttggttgggaggaagggggagtggcgtggaggtggaggagaag 23898543  T
Q  245 gttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
      |||||||||||||| | |||||| ||| ||||||||    
T  23898542 actgtgggtgtgggaggaagagatgttagcggagtgta 23898505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 20349455 - 20349364
Alignment:
Q  36 gaggaaggctggtttgcagagagggtgtcgagaagtgttgggaatggatcaaatactatcttttggttggataggtggttaggtgatattcc 127  Q
    ||||| || |||||||||||||||||||||| ||  || ||| ||| | | | |||| |||||||||  |||||||||||||||||| ||||    
T  20349455 gaggagggttggtttgcagagagggtgtcgaaaaaggtgggggatgtaactagtactttcttttggtatgataggtggttaggtgatgttcc 20349364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 47923989 - 47923940
Alignment:
Q  233 gtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||| |||||||||||||||||| | |||||| ||| ||||||||    
T  47923989 gtggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgta 47923940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 8753227 - 8753283
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||| ||||||  |||||| ||| ||| |||| ||||||||||||||||    
T  8753227 cgtggaggtggaagagaagactgtgggcgtgtgaggaggacatggtagtggagtgta 8753283  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 8384452 - 8384528
Alignment:
Q  205 gctgggaggaagggggtccaccgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgt 281  Q
    ||||||||| |||||||  | ||||||| ||||||||||||||||||| ||||||| ||||| || ||| |||||||    
T  8384452 gctgggaggtagggggtgaagcgtggagatggaggagaaggttgtgggagtgggaggaggagttgctaggggagtgt 8384528  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 34180226 - 34180177
Alignment:
Q  233 gtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||  |||||||||| ||||||| ||||||| |||||||||||||    
T  34180226 gtggaggatgaggttgtgggcgtgggaggaggagatagtagtggagtgta 34180177  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 52470022 - 52470077
Alignment:
Q  227 gtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||| ||||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  52470022 gtggaggaggaggaggaggttgtgggcgtgggaggaggagaaggtagtggagtgta 52470077  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 28358375 - 28358287
Alignment:
Q  42 ggctggtttgcagagagggtgtcgagaagtgttggga-atggatcaaatactatcttttggttggataggtggttaggtgatattccttt 130  Q
    ||||||||||||| ||||||||||| | ||||||||  |||| ||||||||| | |||||||| |||||||||||| | ||| |||||||    
T  28358375 ggctggtttgcagggagggtgtcga-aggtgttgggggatggttcaaatactctgttttggtttgataggtggttacgagatgttccttt 28358287  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 13867464 - 13867512
Alignment:
Q  18 gatggtgtaggcgttgtagaggaaggctggtttgcagagagggtgtcga 66  Q
    ||||| ||||||| ||||||||  |||||||||||||||||||||||||    
T  13867464 gatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcga 13867512  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26805262 - 26805206
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||||||||||||||| || ||||||| ||||||| |||| ||||||| ||||||||    
T  26805262 cgtggaggtggaggaggagattgtgggcgtgggaggaggacatggtagaggagtgta 26805206  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 34352932 - 34352884
Alignment:
Q  18 gatggtgtaggcgttgtagaggaaggctggtttgcagagagggtgtcga 66  Q
    ||||| ||||||| ||||||||  || ||||||||||||||||||||||    
T  34352932 gatggggtaggcgatgtagaggggggttggtttgcagagagggtgtcga 34352884  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 43516379 - 43516427
Alignment:
Q  18 gatggtgtaggcgttgtagaggaaggctggtttgcagagagggtgtcga 66  Q
    ||||| ||||||| ||||||||  |||||||||||||||||||||||||    
T  43516379 gatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcga 43516427  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 52617703 - 52617759
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||| |||| |||||| ||||||||||||||| | |||||||||| ||||||||    
T  52617703 cgtggagttggaagagaagcttgtgggtgtgggaggaagagatggtagaggagtgta 52617759  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 43273711 - 43273656
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgt 281  Q
    ||||||||||||||||| |||||||||| |||||| |||| ||| ||| |||||||    
T  43273711 cgtggaggtggaggagacggttgtgggtttgggaggaggatatgttaggggagtgt 43273656  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 48497751 - 48497825
Alignment:
Q  86 aaatactatcttttggttggataggtggttaggtgatattcctttgtgtgcatggtttagccgcctctttgaatt 160  Q
    ||||||| |||||||||  ||||||||||||||||| | |||||| ||||   ||||||||||| | ||||||||    
T  48497751 aaatactttcttttggtatgataggtggttaggtgagactcctttatgtgtgcggtttagccgcttatttgaatt 48497825  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 2071841 - 2071764
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgtacacatttacttaacgattttg 303  Q
    ||||||||||||||| |||  |||||| ||||||| |||| ||||||| || ||||| ||| |||||| ||| |||||    
T  2071841 cgtggaggtggaggataagactgtgggcgtgggaggaggacatggtagaggggtgtagacaattacttgacggttttg 2071764  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 48497891 - 48497947
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    |||| |||||||||||||| || |||| ||||||| ||||| ||||||| |||||||    
T  48497891 cgtgaaggtggaggagaagattctgggcgtgggaggaggagttggtagtagagtgta 48497947  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 367304 - 367250
Alignment:
Q  228 tggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||| ||||||||  ||||||||||||||||| |||||||| ||| ||||||||    
T  367304 tggagttggaggagggggttgtgggtgtgggaggaggagatgctaggggagtgta 367250  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 52250965 - 52251019
Alignment:
Q  228 tggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||| ||  ||||||||||||||||| |||||||| ||| ||||||||    
T  52250965 tggaggtggagaagggggttgtgggtgtgggaggaggagatgctaggggagtgta 52251019  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 34829712 - 34829664
Alignment:
Q  234 tggaggagaaggttgtgggtgtgggagcaggagatggtagtggagtgta 282  Q
    ||||||||||||||| || |||||||| |||||||| ||| ||||||||    
T  34829712 tggaggagaaggttgaggctgtgggaggaggagatgctagaggagtgta 34829664  T

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Target: scaffold0189 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 6389 - 6336
Alignment:
Q  226 cgtggaggtggaggagaaggttgtgggtgtgggagcaggagatggtagtggagt 279  Q
    ||||||| ||||||||| | ||||||||||||||| ||||| |||||| |||||    
T  6389 cgtggagttggaggagacgtttgtgggtgtgggaggaggagttggtagaggagt 6336  T

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