View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20290_high_5 (Length: 364)
Name: NF20290_high_5
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20290_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 36277315 - 36276984
Alignment:
| Q |
13 |
cagacagacagtgatgaaaataccaacatcaagagatctctttaacacaaggaaatttgcacaagacaatgacctcgggcctcctgtggctgctgnnnnn |
112 |
Q |
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| T |
36277315 |
cagacagacagtgatgaaaataccaacatcaagagatctctttaacacaaagaaatttgcacaagacaatgacctcgggcctcctgtggctgctgttttt |
36277216 |
T |
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| Q |
113 |
nncaatgcacaaagagaaacagctgccagaagacgttgaaattgattaaaaccataaactaaaagtgattgtacgtgctaatgctatttatagctaaagt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277215 |
ttcaatgcacaaagagaaacagctgccagaagacgttgaaattgattaaaaccataaactaaaagtgattgtacgtgctaatgctatttatagctaaagt |
36277116 |
T |
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| Q |
213 |
tgcacaaaataagtttagctattaagggtgttttttggagggggacactttcttcaaagttgcagtcttgctttcataatcgtgctcttatagtttggtt |
312 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36277115 |
tgcacaaaataagtttagctatttagggtgttttttggagggggacactttcttcaaagttgcagtcttgctttcataattgtgctcttatagtttggtt |
36277016 |
T |
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| Q |
313 |
tttgtcctagtttgtaaccaagttgttcgtgg |
344 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36277015 |
tttgtcctagtttgtaaccaagttgttcgtgg |
36276984 |
T |
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