View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20290_high_6 (Length: 339)

Name: NF20290_high_6
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20290_high_6
NF20290_high_6
[»] chr1 (1 HSPs)
chr1 (26-324)||(7165621-7165916)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 7165621 - 7165916
Alignment:
Q  26 ttcttgaagtattaaccaccaatcaaccatttgttttacttctcaaccaccattatcaccaaaattttaattcacttttatccttttcgtcgtgtcacaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7165621 ttcttgaagtattaaccaccaatcaaccatttgttttacttctcaaccaccattatcaccaaaattttaattcacttttatcattttcgtcgtgtcacaa 7165720  T
Q  126 tcgttaatactatataaagcttttgtcaaaaaactataactaaaaattatttatggtcaaatgtgatcaataccatctcaatctcatttacgtagatatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7165721 tcgttaatactatataaagcttttgtcaaaaaactataactgaaaa----ttatggtcagatgtgatcaataccatctcaatctcatttacgtagatatt 7165816  T
Q  226 taaaacttagatatctttagcttgtcattaacccttt-nnnnnnntagttgtgacatccatgtcatcaccatctttaccacctaggtacctattccctgt 324  Q
    |||||||||||||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  7165817 taaaacttagatatctatagcttgtcattaaccctttaaaaaaaatagttgtgacatccatgtcatcaccatctttgccacctaggtacctattcactgt 7165916  T

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