View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20290_low_12 (Length: 227)

Name: NF20290_low_12
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20290_low_12
NF20290_low_12
[»] chr6 (5 HSPs)
chr6 (1-215)||(23631267-23631481)
chr6 (1-215)||(15950481-15950695)
chr6 (1-217)||(13434043-13434248)
chr6 (155-215)||(15957935-15957995)
chr6 (1-210)||(7090592-7090801)
[»] chr7 (3 HSPs)
chr7 (1-211)||(7097591-7097801)
chr7 (1-215)||(15455486-15455700)
chr7 (1-212)||(29526512-29526723)
[»] chr4 (2 HSPs)
chr4 (1-215)||(47782672-47782886)
chr4 (18-211)||(13200534-13200726)
[»] chr1 (2 HSPs)
chr1 (1-215)||(26418959-26419173)
chr1 (1-215)||(32108107-32108321)
[»] scaffold0071 (1 HSPs)
scaffold0071 (1-199)||(52373-52571)
[»] chr2 (1 HSPs)
chr2 (1-215)||(7861284-7861498)
[»] chr8 (1 HSPs)
chr8 (1-125)||(12246858-12246982)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 23631481 - 23631267
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  23631481 aatcgacatttgtgagttgaagttcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaactggacatagtggtgaaaaccacat 23631382  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  23631381 ggtctttgaacgaacatggtttccttctgaatcacgaatacatatgcatatgcctactttattactggatgtagaaaaagagacaacaacattgcatttg 23631282  T
Q  201 agtctaccactcctt 215  Q
    |||||||||||||||    
T  23631281 agtctaccactcctt 23631267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15950695 - 15950481
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  15950695 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 15950596  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | || ||||||||||| ||||| ||||| || || |  || | ||||||||| ||| |||||||||||||| || ||||||||||||||    
T  15950595 ggtttttgaccggacgtggtttccttccgaatcgcgaatgcacataccaatacctactttattgctggatgtagaaaaagaggcatcaacattgcatttg 15950496  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  15950495 agtcttccactcctt 15950481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13434248 - 13434043
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||| ||||| |||| || |||||||||  |||||||||||||||| || | |||||||| |||||||| ||||    
T  13434248 aatcaacatttgtgagctgaagttcattgaaccaccgaattacatgataaagtcgcaaagcttctccaatgttaactagacacagttgtgaaaacaacat 13434149  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||| ||           |  |||||||| |||||| |||||||| | ||| |||||| |  | |||||||| ||| || ||||||||||||||    
T  13434148 ggtgtttgaacga-----------tgttgaatcacaaatacacatgcatatacctaccttattatttgaggtagaaaacgaggcatcaacattgcatttg 13434060  T
Q  201 agtctaccactcctttg 217  Q
    |||||||||| ||||||    
T  13434059 agtctaccacccctttg 13434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 15957995 - 15957935
Alignment:
Q  155 tactttattactgaatgtagaaaaagagacaacaacattgcatttgagtctaccactcctt 215  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||| |||||||||    
T  15957995 tactttattgctggatgtagaaaaagaggcatcaacattgcatttgagtcttccactcctt 15957935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 7090592 - 7090801
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| |||||||||||  |||| ||||  ||||||||||||| | | |||| ||  |||||||||| || ||||| ||  || | ||| | |||||| ||    
T  7090592 aatcaacatttgtgagccgaagttcatgaatccaccaaattgtatggtaaattcccaaagcttctctaacgtcaactgatcataatggggtaaaccagat 7090691  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||   ||||||||||||| ||||||| ||| | ||||||| ||| | ||| |||||| || |  ||||||| ||| || ||||||| |||||     
T  7090692 ggtttttgagtaaacatggtttcctactgaatctcgagtgcatatgcctatacctaccttattattggagttagaaaatgaggcatcaacattacattta 7090791  T
Q  201 agtctaccac 210  Q
    || |||||||    
T  7090792 agcctaccac 7090801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7097591 - 7097801
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  7097591 aatcaacatttgtgagctgaagttcattgatccaccgaattgcatgataaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacat 7097690  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    |||||| ||| |||| |||||||||| |||||| |||||||| |||| ||||| |||||||| |||| |||||||||||||| || | ||||||||||||    
T  7097691 ggtcttggaacgaacgtggtttccttgtgaatcgcgaatacacatgcctatgcctactttataactggatgtagaaaaagaggcatcgacattgcatttg 7097790  T
Q  201 agtctaccact 211  Q
    |||||||||||    
T  7097791 agtctaccact 7097801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 15455700 - 15455486
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  15455700 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 15455601  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | |||||||||||||| ||||| ||||| || || |  || | ||||||||| ||  |||||||||||||| || ||||||||||||||    
T  15455600 ggtttttgaccggacatggtttccttccgaatcgcgaatgcacataccaatacctactttattgctagatgtagaaaaagaggcatcaacattgcatttg 15455501  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  15455500 agtcttccactcctt 15455486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 29526723 - 29526512
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  29526723 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 29526624  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | || || |||||||| ||||| ||||| || || |  || | ||||||||| ||| |||||||||||||| || ||||||||||||||    
T  29526623 ggtttttgaccggacgtgatttccttccgaatcgcgaatgcacataccaatacctactttattgctggatgtagaaaaagaggcatcaacattgcatttg 29526524  T
Q  201 agtctaccactc 212  Q
    ||||| ||||||    
T  29526523 agtcttccactc 29526512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 47782886 - 47782672
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||||| ||| ||||||||||||| ||||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  47782886 aatcaacatttgtgagttaaagttcattgatccaccgaattgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 47782787  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | || ||||||||||| ||||| ||||| || || |  || | ||||||||| ||| |||||||||||||| || ||||||||||||||    
T  47782786 ggtttttgactggacgtggtttccttccgaatcgcgaatgcacataccaatacctactttattgctggatgtagaaaaagaggcatcaacattgcatttg 47782687  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  47782686 agtcttccactcctt 47782672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 13200726 - 13200534
Alignment:
Q  18 tgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacatggtctttgaaagaacat 117  Q
    ||||| ||||||||||||| ||||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  13200726 tgaagttcattgatccaccgaattgcatgataaagtcccaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtctttgaacgaacat 13200627  T
Q  118 ggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttgagtctaccact 211  Q
    ||||||||  ||||||  ||||||| ||| |||| | ||||||||||||| ||||| ||||  |  || ||||||||||||| |||||||||||    
T  13200626 ggtttcctgttgaatcgtgaatacacatgtatatacctactttattactggatgta-aaaagaatgcatcaacattgcatttaagtctaccact 13200534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 26418959 - 26419173
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  26418959 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 26419058  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | || ||||||||||| ||||| ||||| || || |  || | ||||||||| ||| |||||||||||||| || ||||||||||||||    
T  26419059 ggtttttgaccggacgtggtttccttccgaatcgcgaatgcacataccaatacctactttattgctggatgtagaaaaagaggcatcaacattgcatttg 26419158  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  26419159 agtcttccactcctt 26419173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 32108321 - 32108107
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  32108321 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 32108222  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||  | || ||||||||||| ||||| ||||| || || |  || | ||||||||| ||| |||||||||||||| || ||||||||||||||    
T  32108221 ggtttttgacgggacgtggtttccttccgaatcgcgaatgcacataccaatacctactttattgctggatgtagaaaaagaggcatcaacattgcatttg 32108122  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  32108121 agtcttccactcctt 32108107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 52571 - 52373
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  52571 aatcaacatttgtgagctgaagttcattgatccaccaagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 52472  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcattt 199  Q
    ||| |||||| | |||||||||||||| ||||| | |||  | || |  || | |||||| || ||  |||||||||||||| || |||||||||||||    
T  52471 ggtttttgaacggacatggtttccttccgaatcgcaaatgtacataccaatacctacttttttgctagatgtagaaaaagaggcatcaacattgcattt 52373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 7861498 - 7861284
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||||||||||| | ||||| |||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  7861498 aatcaacatttgtgagctgaagttcattgatccaccgagttgcatgataaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacat 7861399  T
Q  101 ggtctttgaaagaacatggtttccttctgaatcacgaatacatatgcatatgcttactttattactgaatgtagaaaaagagacaacaacattgcatttg 200  Q
    ||| |||||| | ||   |||||||||  |||| | ||| || || |  || | ||||||||| ||| ||||||| |||||| || ||||||||||||||    
T  7861398 ggtttttgaacggacgcagtttccttccaaatcgcaaatgcacataccaatacctactttattgctggatgtagagaaagaggcatcaacattgcatttg 7861299  T
Q  201 agtctaccactcctt 215  Q
    ||||| |||||||||    
T  7861298 agtcttccactcctt 7861284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12246982 - 12246858
Alignment:
Q  1 aatcgacatttgtgagttgaagctcattgatccaccaaattgcacgataaagtctaaaagcttctccaatgtcaattggacacagtggtgaaaaccacat 100  Q
    |||| ||||||||||| ||||| ||||  ||||||| ||||||| | |||||||| ||||||||||||   |||| |  ||||||||| | |||||||||    
T  12246982 aatcaacatttgtgagctgaagttcatgaatccaccgaattgcatggtaaagtctcaaagcttctccagcatcaactaaacacagtggagtaaaccacat 12246883  T
Q  101 ggtctttgaaagaacatggtttcct 125  Q
     || ||||| | |||||||||||||    
T  12246882 tgtttttgagataacatggtttcct 12246858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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