View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20290_low_7 (Length: 338)
Name: NF20290_low_7
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20290_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 325
Target Start/End: Original strand, 36250011 - 36250316
Alignment:
| Q |
21 |
aagcacataatttttggttgttcctcttcactttcatctttcattttttaaaagttcagatccgtagccttcgtgtcatgcttgagaaggaaaagtttgg |
120 |
Q |
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| T |
36250011 |
aagcacataaattttggttgttcctcttcactttcatctttcattttttaaaagttcagatccgtaaccttcgtgtcatgcttgagaaggaaaagtttgg |
36250110 |
T |
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| Q |
121 |
tacatgttttatttccttcattaatta-cagatgccatgcatgaatgaacgagaaattgagaagaaggaaaaatggaaattctggatcggtattttaaag |
219 |
Q |
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| T |
36250111 |
tacatgttttatttccttcattaattttcagatgccatgcatgaatgaacgagaaattgagaagaaggaaaaatggaaattctggatcggtcttttaaag |
36250210 |
T |
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| Q |
220 |
gatgaggtcgaggttagagtttgattaacaaataagatatgtttcattccatactctataatcaattcaggttgacatagtaatttcacacttctctttg |
319 |
Q |
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| T |
36250211 |
gatgagatcgaggttggagtttgattaacaaataagatatgtttcattccatactctataatcaattcaggttgacatagtaatttcacacttctctttg |
36250310 |
T |
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| Q |
320 |
attcct |
325 |
Q |
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|||||| |
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| T |
36250311 |
attcct |
36250316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 7299533 - 7299590
Alignment:
| Q |
260 |
gtttcattccatactctataatcaattcaggttgacatagtaatttcacacttctctt |
317 |
Q |
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| T |
7299533 |
gtttcattccatactctttaatcaattcaggttgacgcagtaacttaacacttctctt |
7299590 |
T |
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