View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20290_low_8 (Length: 323)

Name: NF20290_low_8
Description: NF20290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20290_low_8
NF20290_low_8
[»] chr6 (5 HSPs)
chr6 (83-313)||(23631519-23631749)
chr6 (100-301)||(15950745-15950950)
chr6 (138-313)||(13434286-13434461)
chr6 (216-295)||(11986166-11986245)
chr6 (173-295)||(21698661-21698783)
[»] chr7 (9 HSPs)
chr7 (100-313)||(7097336-7097553)
chr7 (100-301)||(29526773-29526978)
chr7 (219-301)||(15455750-15455832)
chr7 (175-295)||(47280316-47280432)
chr7 (175-279)||(664985-665089)
chr7 (216-295)||(27244088-27244167)
chr7 (216-294)||(21588187-21588265)
chr7 (216-301)||(19017064-19017149)
chr7 (215-295)||(33973035-33973115)
[»] scaffold0071 (1 HSPs)
scaffold0071 (100-301)||(52621-52826)
[»] chr4 (5 HSPs)
chr4 (100-301)||(47782936-47783141)
chr4 (100-295)||(13200791-13200990)
chr4 (100-249)||(4946609-4946762)
chr4 (216-301)||(17459345-17459430)
chr4 (216-301)||(13905905-13905990)
[»] chr1 (4 HSPs)
chr1 (100-301)||(26418704-26418909)
chr1 (100-301)||(32108371-32108576)
chr1 (100-282)||(11420277-11420463)
chr1 (216-301)||(22161696-22161781)
[»] chr3 (3 HSPs)
chr3 (138-295)||(32073565-32073722)
chr3 (216-301)||(13434500-13434585)
chr3 (216-295)||(9734487-9734566)
[»] chr2 (5 HSPs)
chr2 (136-301)||(34819523-34819683)
chr2 (136-290)||(7861559-7861709)
chr2 (216-301)||(20471121-20471206)
chr2 (216-295)||(34071401-34071480)
chr2 (189-295)||(31426400-31426506)
[»] chr5 (3 HSPs)
chr5 (138-291)||(38640052-38640204)
chr5 (179-291)||(19609155-19609267)
chr5 (233-301)||(31291659-31291727)
[»] chr8 (3 HSPs)
chr8 (216-292)||(7995139-7995215)
chr8 (216-288)||(25133130-25133202)
chr8 (216-282)||(3989486-3989552)
[»] scaffold1689 (1 HSPs)
scaffold1689 (216-295)||(864-943)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 83 - 313
Target Start/End: Complemental strand, 23631749 - 23631519
Alignment:
Q  83 ttgatggaatgaatatgatattatttcattaaaaattaaatgagtaatgaatgaatttcatcaaagatgtggaagctagggaatagtgtagctgtcttag 182  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  23631749 ttgatggaatgaatatgatattatttcattaacaattaaatgagtaatgaatgaatttcatcaaagatgtggaagctagggaatagtgtggctgccttag 23631650  T
Q  183 ctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatgga 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23631649 ctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaatatattacaaaaatggatattattatccataatgga 23631550  T
Q  283 tccaaattcggtgctatcttcactgcctttg 313  Q
    ||||||||||||||||||||| |||||||||    
T  23631549 tccaaattcggtgctatcttcgctgcctttg 23631519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 15950950 - 15950745
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||    
T  15950950 atatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagc 15950851  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  || ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  15950850 aacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 15950751  T
Q  296 ctatct 301  Q
     |||||    
T  15950750 ttatct 15950745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 313
Target Start/End: Complemental strand, 13434461 - 13434286
Alignment:
Q  138 tttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtt 237  Q
    |||||||||||||||||||| || | |||| |||  ||| ||||||||||||||||||||  || | || || |||  |||||||||| | |||||||||    
T  13434461 tttcatcaaagatgtggaagttaagaaataatgtgtctgccttagctaactcatgagcaatctcttttgattgtctcctaataaactcaacatgagagtt 13434362  T
Q  238 tgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatcttcactgcctttg 313  Q
    ||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||| | |||||||| | |||||||||    
T  13434361 tgttaaaaagaaattagaaaactggatactattatccataattgattcaaatttgatgctatctcctctgcctttg 13434286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 11986245 - 11986166
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    |||||||||||| |||||||||||||||| |  | |||||||  |||| | || ||||||||||||| ||||| ||||||    
T  11986245 taataaactcgacatgagagtttgttaaataagtgttacaaagttggacactactatccataatggaaccaaactcggtg 11986166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 295
Target Start/End: Complemental strand, 21698783 - 21698661
Alignment:
Q  173 gctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattat 272  Q
    |||| |||||||||  |||||||||| || | |||||  ||  |||||||||||| |||||||||||||||| |  |||| |  ||||||| | || | |    
T  21698783 gctgccttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcggaaatggacactactgt 21698684  T
Q  273 ccataatggatccaaattcggtg 295  Q
    ||||||| || ||||||||||||    
T  21698683 ccataatagagccaaattcggtg 21698661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 313
Target Start/End: Original strand, 7097336 - 7097553
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| ||||||  |||    |||||||| |||||||||||||||||| |||| ||| |||| ||||||||||||||||||    
T  7097336 atatcatttcattaaaaattaaatcagtaatacatgttggaatttcattaaagatgtggaagctaggtaataatgtggctgccttagctaactcatgagc 7097435  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  || ||||||||||||| || ||||||| |||||||| |||||||||| | |||||| |||||||||||||||||||||||||||    
T  7097436 aacctcatttgcttgcctcttaataaactcgacataagagtttattaaaaaggtattacaaaacttgatatttttatccataatggatccaaattcggtg 7097535  T
Q  296 ctatcttcactgcctttg 313  Q
    |||||| | |||||||||    
T  7097536 ctatctcctctgcctttg 7097553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 29526978 - 29526773
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||    
T  29526978 atatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagc 29526879  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  || ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  29526878 aacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 29526779  T
Q  296 ctatct 301  Q
     |||||    
T  29526778 ttatct 29526773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 15455832 - 15455750
Alignment:
Q  219 taaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||| |||||    
T  15455832 taaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgttatct 15455750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 47280316 - 47280432
Alignment:
Q  175 tgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatcc 274  Q
    |||||||||||||||||||||||| || | || ||  |||  |||||    || ||||||||||||||||||  |||||||||| || |||||||||||     
T  47280316 tgtcttagctaactcatgagcaacctcatttgattgccttccaataa----gacatgagagtttgttaaaaaagtattacaaaactgaatattattatct 47280411  T
Q  275 ataatggatccaaattcggtg 295  Q
    |||||||||||||||||||||    
T  47280412 ataatggatccaaattcggtg 47280432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 664985 - 665089
Alignment:
Q  175 tgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatcc 274  Q
    |||||||||||| ||||| ||||| || | ||||| |||  |||||||||||| |||||||||||||||| || || | ||||| ||||||  | |||||    
T  664985 tgtcttagctaattcatgtgcaacctcatttgcttgtctcctaataaactcgacatgagagtttgttaaataggtactgcaaaattggatacaactatcc 665084  T
Q  275 ataat 279  Q
    |||||    
T  665085 ataat 665089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 27244088 - 27244167
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    |||||||||||| |||||||||||||||| |  |||||||||| || | | || ||||||||||||| ||||| ||||||    
T  27244088 taataaactcgacatgagagtttgttaaataagtattacaaaattgtaaactactatccataatggaaccaaactcggtg 27244167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 21588187 - 21588265
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggt 294  Q
    |||||||||||| |||||||||||||||| ||  | || | || |||||| || | ||||||||||| |||||||||||    
T  21588187 taataaactcgacatgagagtttgttaaataggaactatagaattggatactactgtccataatggaaccaaattcggt 21588265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 19017064 - 19017149
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||| | | |||||||||||||| |   |||||| ||||| ||| |||||||||| ||||| ||||| |||||| |||||    
T  19017064 taataaactcaacacgagagtttgttaaatatgaattacagaaatgtatactattatccatgatggaaccaaactcggtgatatct 19017149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 33973115 - 33973035
Alignment:
Q  215 ttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    |||||||||| || |||||||||||||||| |  | |||||||| || | | ||||||| |||||||| ||||| ||||||    
T  33973115 ttaataaacttgacatgagagtttgttaaataagtgttacaaaattgtaaactattatctataatggaaccaaactcggtg 33973035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 52826 - 52621
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    |||||||||||||||||||||||||||  ||| ||| |||| |||||||||||||||| |    
T  52826 atatcatttcattaaaaattaaatcagaaatacatgctggaatttcatcaaagatgtggaagctaggacataatgtggctgccttagctaactcatgaac 52727  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  |||||||||||| |||||||||||||||||| ||||| ||||| |||||| |||| ||||||||||||||||||||||||    
T  52726 aacgtcatttgcttgcctcctaataaactcgacatgagagtttgttaaaaatatattgcaaaactggatagtattctccataatggatccaaattcggtg 52627  T
Q  296 ctatct 301  Q
     |||||    
T  52626 ttatct 52621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 47783141 - 47782936
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||    
T  47783141 atatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagc 47783042  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  || ||||||||| |||||||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||    
T  47783041 aacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggattgtattctccataatggatccaaattcggtg 47782942  T
Q  296 ctatct 301  Q
     |||||    
T  47782941 ttatct 47782936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 13200990 - 13200791
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| ||| ||  |||    | |||||||||| |||||||||||||  |||| | | | || ||||||||||||||||||    
T  13200990 atatcatttcattaaaaattaaatcagtgatacatgttggactttcatcaaaaatgtggaagctagaaaataatatggttgccttagctaactcatgagc 13200891  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  |||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||||||||| ||| ||||||||||    
T  13200890 aacctcatttgcttgcctcctaatgaactcgacatgagagtttgttaaaaagatattacaaaactgaatgttattatccataatgcatctaaattcggtg 13200791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 249
Target Start/End: Original strand, 4946609 - 4946762
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    ||||| ||||||||| |||||||||||  ||| ||| |||||||||||||||||||||||    
T  4946609 atatcatttcattaaaaattaaatcagaaatacatgctggaattttatcaaagatctggaagctaggacataatgtggctgtcttagctaactcatgagc 4946708  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagat 249  Q
    ||| || | |||||  ||  ||||||||||||||||||| ||||||||||||||    
T  4946709 aacctcatttgcttgcctcctaataaactcgatatgagaatttgttaaaaagat 4946762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 17459430 - 17459345
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||||| |||||||||||||||  |  | |||||||| ||||||||| |||||||||| || |||||||||||| |||||    
T  17459430 taataaactcgacatgagagtttgttaagtaagtgttacaaaagtggatattactatccataatagaaccaaattcggtgatatct 17459345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 13905905 - 13905990
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||  | |||||||| |||||||||   ||||||||| |||||| | |||||||||||||| ||||| |||||| |||||    
T  13905905 taataaacttaacatgagagtatgttaaaaatgaattacaaaactggatacttttatccataatggagccaaactcggtgatatct 13905990  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 301
Target Start/End: Original strand, 26418704 - 26418909
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||    
T  26418704 atatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagc 26418803  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  || ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  26418804 aacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 26418903  T
Q  296 ctatct 301  Q
     |||||    
T  26418904 ttatct 26418909  T

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Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 301
Target Start/End: Complemental strand, 32108576 - 32108371
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||    
T  32108576 atatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagc 32108477  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||| || | |||||  ||  || ||||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  32108476 aacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 32108377  T
Q  296 ctatct 301  Q
     |||||    
T  32108376 ttatct 32108371  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 11420277 - 11420463
Alignment:
Q  100 atattatttcattaaaaattaaatgagtaatgaatg----aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagc 195  Q
    |||| ||||||||||||||||||| || |||  |||    | |||||||||||||||||||||||||   || ||| |||| |||| |||| |||||| |    
T  11420277 atatcatttcattaaaaattaaatcagaaatatatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttaactaattcatgaac 11420376  T
Q  196 aacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatgga 282  Q
    ||| || | | |||  ||  |||||||||||| |||||||||||||||||||||||||||||| |||||| |||| | |||||||||    
T  11420377 aacctcatttacttgcctcctaataaactcgacatgagagtttgttaaaaagatattacaaaattggatagtattcttcataatgga 11420463  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 22161781 - 22161696
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||||| |||||||||||||||  |  |||||||||| |||||| || |||||||||| || ||||||| |||| |||||    
T  22161781 taataaactcgacatgagagtttgttaagtaagtattacaaaattggatactactatccataatagaaccaaatttggtgatatct 22161696  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 138 - 295
Target Start/End: Original strand, 32073565 - 32073722
Alignment:
Q  138 tttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtt 237  Q
    |||||||||||||||||||||||||   || ||| |||| ||||||||| ||||||||||| || | |||||  ||  || ||||||||| |||||||||    
T  32073565 tttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T
Q  238 tgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  32073665 tgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtg 32073722  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 13434500 - 13434585
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||  | ||||||||||||||||||   |||||||||  ||||| ||||||||||||||||  |||| |||||| |||||    
T  13434500 taataaacttaacatgagagtttgttaaaaatgaattacaaaacgggatactattatccataatggagtcaaactcggtgatatct 13434585  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 9734487 - 9734566
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    |||||||||||| ||||||||||||||||  | ||||||| || |||| | |||||||||| || || ||||| ||||||    
T  9734487 taataaactcgacatgagagtttgttaaattggtattacagaattggacactattatccatgatagagccaaactcggtg 9734566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 136 - 301
Target Start/End: Complemental strand, 34819683 - 34819523
Alignment:
Q  136 aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagag 235  Q
    |||||||||||||||||||||||||||||  | ||| |||| ||||| ||| |||| | ||||||     | || |||| |||||||||||| |||| ||    
T  34819683 aatttcatcaaagatgtggaagctagggataaatgtggctgccttagttaattcataaacaacat-----gtttgtcttctaataaactcgacatgaaag 34819589  T
Q  236 tttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  34819588 tttgttaaaaggatattacaaaactggatattatcatccataatggatccaaattcggtgctatct 34819523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 290
Target Start/End: Complemental strand, 7861709 - 7861559
Alignment:
Q  136 aatttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagag 235  Q
    |||||||||||||||||| ||| ||||  ||| | | | || ||||||||||||||||||||  || | |||||  ||  |||||||    | |||||||    
T  7861709 aatttcatcaaagatgtgaaagttaggatataatatggttgccttagctaactcatgagcaatctcatttgcttgcctcctaataaa----acatgagag 7861614  T
Q  236 tttgttaaaaagatattacaaaaatggatattattatccataatggatccaaatt 290  Q
    ||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||    
T  7861613 tttgttaaaaagatattgcaaaactggatagtattctccataatggatccaaatt 7861559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 20471206 - 20471121
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||| | |||||||||||||||  | || | ||| || |||||| |||||||||||||||| || ||||||||| |||||    
T  20471206 taataaactctacatgagagtttgttaagtaaatgtgacacaattggatactattatccataatggaaccgaattcggtgatatct 20471121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 34071401 - 34071480
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    ||||||| |||| |||||||||||||||| || | |||||||| ||||||  | |||| ||||| || ||||||||||||    
T  34071401 taataaattcgacatgagagtttgttaaataggtgttacaaaagtggataccactatctataattgaaccaaattcggtg 34071480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 295
Target Start/End: Complemental strand, 31426506 - 31426400
Alignment:
Q  189 catgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaa 288  Q
    |||||||||| || | |||||  || ||||||||||||| |||||||||||||||| |  |||| || || |||| | || | |||||||| || |||||    
T  31426506 catgagcaacctcatttgcttgcctcttaataaactcgacatgagagtttgttaaataattattgcagaattggacactactgtccataatagagccaaa 31426407  T
Q  289 ttcggtg 295  Q
    |||||||    
T  31426406 ttcggtg 31426400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 291
Target Start/End: Original strand, 38640052 - 38640204
Alignment:
Q  138 tttcatcaaagatgtggaagctagggaatagtgtagctgtcttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtt 237  Q
    ||||||||||||||| |||| |||  |||| ||| |||| |||| |||||||||||||||| || |||   |  ||  ||||||||| || |||||||||    
T  38640052 tttcatcaaagatgtagaagttagaaaataatgtggctgccttaactaactcatgagcaacctcatctatatgcctcgtaataaacttgacatgagagtt 38640151  T
Q  238 tgttaaaaagatattacaaaaatggatattattatccataatggatccaaattc 291  Q
    | | ||||||||||||||||| || || |||||||||||||| |||| ||||||    
T  38640152 t-taaaaaagatattacaaaattgaatgttattatccataatagatctaaattc 38640204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 19609155 - 19609267
Alignment:
Q  179 ttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataa 278  Q
    ||||||||  |||||||||| || | |||||  ||  |||||||||||| |||||||||||||||| |  |||| || || |||| |||| | |||||||    
T  19609155 ttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataattattgcagaattggacattactgtccataa 19609254  T
Q  279 tggatccaaattc 291  Q
    | || ||||||||    
T  19609255 tagagccaaattc 19609267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 31291727 - 31291659
Alignment:
Q  233 gagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtgctatct 301  Q
    |||||||||||| ||  |||||| || |||||| |||||||||| ||||| ||||| |||||| |||||    
T  31291727 gagtttgttaaataggaattacagaattggatactattatccatgatggaaccaaactcggtgatatct 31291659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 292
Target Start/End: Complemental strand, 7995215 - 7995139
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcg 292  Q
    |||||||||||| |||||||||||||||| ||  | || |||| |||||| || ||||||||||||| |||||||||    
T  7995215 taataaactcgacatgagagtttgttaaataggaactataaaattggatactactatccataatggaaccaaattcg 7995139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 25133202 - 25133130
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaa 288  Q
    |||||||||| |||||||||||| ||||| ||  |||||| || |||||| || ||||||||||||| |||||    
T  25133202 taataaactcaatatgagagtttattaaataggaattacataattggatactactatccataatggaaccaaa 25133130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 282
Target Start/End: Complemental strand, 3989552 - 3989486
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatgga 282  Q
    |||||||||| | |||||||||||||||| ||  |||||| || |||||| || |||||||||||||    
T  3989552 taataaactccacatgagagtttgttaaataggaattacataattggatactactatccataatgga 3989486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 943 - 864
Alignment:
Q  216 taataaactcgatatgagagtttgttaaaaagatattacaaaaatggatattattatccataatggatccaaattcggtg 295  Q
    |||||||||||| |||||||||||||||| |   |||||| |||| ||   |||||||||||||||| ||||| ||||||    
T  943 taataaactcgacatgagagtttgttaaataatcattacagaaattgaagctattatccataatggaaccaaactcggtg 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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