View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20291_low_1 (Length: 432)
Name: NF20291_low_1
Description: NF20291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20291_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 416
Target Start/End: Original strand, 1027764 - 1028146
Alignment:
| Q |
22 |
taacatattttgaacttattttgattgtatgtagttgaaattgcgttccttcacgcaactgacgtattgatagttgttaaatcaagatcatatgatacat |
121 |
Q |
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| T |
1027764 |
taacatattttgaacttattttgattgtatgtagttgaaattgcattacttcacgcaattgaagtattggtagttgttaaatcaagatcatatgatacat |
1027863 |
T |
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| Q |
122 |
gaaattggccgatggttnnnnnnnncaagtttaaaatcaaacaattcaaccttgatctacaacttgtcgaatgacaacataaatgaatgagattatgatt |
221 |
Q |
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| T |
1027864 |
aaaattggccgatatttaaaaaaaacaagcttaaaatcaaacaattcaaccttgatctacaacttgtcgaatgacaacataaatgaatgagattatgatt |
1027963 |
T |
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| Q |
222 |
gtatgcaatccaaaacactcgtattaaccgcatttgattgcatttccatgtgcattttcaagcaatataaaaatcacaatgctaacgcaactacgattaa |
321 |
Q |
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| T |
1027964 |
gtatgcaatccaaaacactcgtattaatcacatttgattgcatttccatg------------caatataaaaatcacaatgctaacgcaactacgattaa |
1028051 |
T |
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| Q |
322 |
caattttgaagaagaatggaaaggttaagagaaatataactatacaaggatatcacatgtactttttaatgattgatttaatcgtagccctctgt |
416 |
Q |
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| T |
1028052 |
caattttgaagaagaatggaaaggttaagagaaatataactatacaaggatatcacgtgtattttttaatgaatgatttaatcgtagccctctgt |
1028146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 803673 - 803702
Alignment:
| Q |
85 |
gtattgatagttgttaaatcaagatcatat |
114 |
Q |
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| T |
803673 |
gtattgatagttgttaaatcaagatcatat |
803702 |
T |
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