View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20291_low_4 (Length: 233)
Name: NF20291_low_4
Description: NF20291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20291_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 4650570 - 4650645
Alignment:
| Q |
142 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaac |
217 |
Q |
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| T |
4650570 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaac |
4650645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 23681435 - 23681394
Alignment:
| Q |
7 |
attcacctagtttatttatttttactgaaataattcacctag |
48 |
Q |
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| T |
23681435 |
attcacctagtttatttatttttactgaaataattcacctag |
23681394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 4650430 - 4650481
Alignment:
| Q |
1 |
gcaataattcacctagtttatttattt---ttactgaaataattcacctagc |
49 |
Q |
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| T |
4650430 |
gcaataattcacctagtttatttatttttattactgaaataattcacctagc |
4650481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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