View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20291_low_5 (Length: 218)
Name: NF20291_low_5
Description: NF20291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20291_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 55506124 - 55505930
Alignment:
| Q |
15 |
aaaatcttcctccattcatctttctatcactcttccgtcctcctcttagaaacagaacctaaagtgtttctatcagtgctctccccatcaaattcaacta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55506124 |
aaaatcttcctccattcatctttctatcactcttccgtcctcctcttagaaacagaacctaaagtgtttctatcagtgctctccccatcaaattcaacta |
55506025 |
T |
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| Q |
115 |
acttattatagtcaaattgattaaaatagttacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaactagaataat |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55506024 |
acttattatagtcaaattggttaaaatagttacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaactagactaat |
55505930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 49087128 - 49086981
Alignment:
| Q |
64 |
aaacagaacctaaagtgtttctatcagtgctctccccatcaaattcaactaacttattatagtcaaattgattaaaatagttacattgatttacatacag |
163 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||| || ||| ||||| |||| ||| |||| ||||||| |||||||| ||||||| ||| |
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| T |
49087128 |
aaacagaaactaaaatgtttctatcagtgctctctccatcatatacaagtaactgattaatgtctgattggctaaaataattacattgttttacatgcag |
49087029 |
T |
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| Q |
164 |
ct--tgcatgacattgtcaaccaaaattaatgatagaactagaataat |
209 |
Q |
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| T |
49087028 |
cttatgcatgacattgccagccaacattaatgacaaaactagactaat |
49086981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 43633683 - 43633871
Alignment:
| Q |
15 |
aaaatcttcctccattcatctttctatcactcttccgtcctcctcttagaaacagaacctaaagtgtttctatcagtgctct-ccccatcaaattcaact |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| || | |
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| T |
43633683 |
aaaagcttcctccattcatctttctatcactcttccgtccccctcttagaaacataacctaaagtgtttctatcagtgctctcccccatgaaatttaagt |
43633782 |
T |
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| Q |
114 |
aacttattatagtcaaattgattaaaatagttacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaacta |
202 |
Q |
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||||||||||| |||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43633783 |
aacttattataatcaaattggctaaattattcacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaacta |
43633871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 43996244 - 43996056
Alignment:
| Q |
15 |
aaaatcttcctccattcatctttctatcactcttccgtcctcctcttagaaacagaacctaaagtgtttctatcagtgctct-ccccatcaaattcaact |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| || | |
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| T |
43996244 |
aaaagcttcctccattcatctttctatcactcttccgtccccctcttagaaacataacctaaagtgtttctatcagtgctctcccccatgaaatttaagt |
43996145 |
T |
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| Q |
114 |
aacttattatagtcaaattgattaaaatagttacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaacta |
202 |
Q |
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||||||||||| |||||||| |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43996144 |
aacttattataatcaaattggctaaattattcacattgatttacatacagcttgcatgacattgtcaaccaaaattaatgatagaacta |
43996056 |
T |
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