View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20292_high_1 (Length: 448)

Name: NF20292_high_1
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20292_high_1
NF20292_high_1
[»] chr1 (5 HSPs)
chr1 (118-432)||(5450153-5450463)
chr1 (6-334)||(5450477-5450823)
chr1 (73-166)||(6587078-6587172)
chr1 (73-129)||(50878842-50878898)
chr1 (75-159)||(42312879-42312962)
[»] chr4 (5 HSPs)
chr4 (73-169)||(41668883-41668978)
chr4 (75-169)||(7372618-7372711)
chr4 (114-148)||(21124584-21124618)
chr4 (114-148)||(21144674-21144708)
chr4 (73-194)||(19936233-19936353)
[»] chr6 (4 HSPs)
chr6 (73-159)||(4349926-4350011)
chr6 (97-159)||(4350165-4350227)
chr6 (73-138)||(14333915-14333980)
chr6 (73-129)||(7271594-7271649)
[»] chr2 (8 HSPs)
chr2 (73-183)||(14902281-14902389)
chr2 (75-159)||(9373050-9373131)
chr2 (73-194)||(40212268-40212389)
chr2 (73-189)||(24026674-24026789)
chr2 (73-138)||(6582403-6582467)
chr2 (74-194)||(35664502-35664623)
chr2 (73-129)||(36184396-36184452)
chr2 (33-129)||(2393798-2393895)
[»] chr7 (8 HSPs)
chr7 (73-167)||(27746641-27746733)
chr7 (73-194)||(20246663-20246784)
chr7 (73-194)||(37808033-37808154)
chr7 (102-169)||(30275306-30275373)
chr7 (103-159)||(36683941-36683997)
chr7 (121-164)||(26772607-26772650)
chr7 (87-129)||(10066531-10066573)
chr7 (110-159)||(3412157-3412206)
[»] chr3 (5 HSPs)
chr3 (73-158)||(9107100-9107185)
chr3 (96-159)||(43790646-43790709)
chr3 (87-148)||(24481356-24481416)
chr3 (73-194)||(1543206-1543324)
chr3 (96-128)||(39328370-39328402)
[»] chr8 (3 HSPs)
chr8 (73-159)||(154621-154706)
chr8 (114-168)||(32236990-32237044)
chr8 (73-129)||(40568900-40568956)
[»] chr5 (3 HSPs)
chr5 (96-148)||(6419545-6419597)
chr5 (77-137)||(36295986-36296045)
chr5 (96-148)||(43007750-43007802)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 118 - 432
Target Start/End: Complemental strand, 5450463 - 5450153
Alignment:
Q  118 aagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgatggaccaccaaactctcataaactatcttaacattatgaattgtat 217  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||| |    
T  5450463 aagtttgatgtttatatatatttattagttatgactcaaattatagattca------accaccaaaatctcataaactatcttaacattatgaattgtgt 5450370  T
Q  218 cctttcacggttcaaccttttaatttggttttattctaacatgaaaattccttggcaagttatagaagaaatttataatagatagagacaaaggaataaa 317  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5450369 cttttcacggttcaaccttttaatttggttttattctaacatgaaaattcattggcaagttatagaagaaatttataatagatagagacaaaggaataaa 5450270  T
Q  318 agaaacatttggtcaac--nnnnnnnnnnnnncattgtaaacattaaccatttacttcactactataagttccaaatttacacattgctaaattgctaac 415  Q
    |||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5450269 agaaacatttggtcaacaaaaaaaaaaaaagacattgtaaacattaaccatttacttcactactataagttccaaatttacacattgctaaattgctaac 5450170  T
Q  416 taacaaacatgctaagt 432  Q
    |||||||||||||||||    
T  5450169 taacaaacatgctaagt 5450153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 5450823 - 5450477
Alignment:
Q  6 agagagaagaacgcgaccgccctaggcccaaaaaattagtacgaaatttgggctccaannnnnnnnnaggggtctattagtccctaaaacaaattgctta 105  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||||| || ||||         || ||||||||| ||||||||||||||||||||    
T  5450823 agagcgaagaacgcgaccgccttagacccaaaaaattagtacgaaatttgagccccaatttttttt-agaggtctattaatccctaaaacaaattgctta 5450725  T
Q  106 gttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgatggaccaccaaactctcataaactatcttaacat 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||||||    
T  5450724 gttctttgtatcaagtttgatgtttatatatatttattagttatgatccaaattatagattcgcgatagaccatcaaaatctcataaactatcttaacat 5450625  T
Q  206 tatgaattgtatcctttcacggt---------------------tcaaccttttaatttggttttattctaacatgaaaattccttggcaagttatagaa 284  Q
    |||||||||| ||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5450624 tatgaattgtgtcctttcacggttcaattgtgtcctttcacggttcaaccttttaatttggttttattctaacatgaaaattccttggcaagttatagaa 5450525  T
Q  285 gaaatttataatagatagagacaaaggaataaaagaaacatttggtcaac 334  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  5450524 gaaatttataatagat--agacaaaggaataaaagaaacatttggtcaac 5450477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 6587078 - 6587172
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgt-atcaagtttgatgttaatatatatttattagttatgacccaaattatagatt 166  Q
    ||||||||||||  |||||||| ||||||||| ||| ||| | ||||||||||||||| ||||| ||||||||||||  ||||||||||||||||    
T  6587078 aggggtctattaagccctaaaaaaaattgctttgtttttttttatcaagtttgatgtttatatagatttattagttagaacccaaattatagatt 6587172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 50878898 - 50878842
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgtt 129  Q
    ||||||||||||| |||||||| || |||||||||| ||| ||||||||||||||||    
T  50878898 aggggtctattagaccctaaaaaaagttgcttagttttttatatcaagtttgatgtt 50878842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 42312879 - 42312962
Alignment:
Q  75 gggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    ||||||||||  |||||||| |||||| |||||| |||| ||||  ||||||||| |||||||||||||||| | || |||||||    
T  42312879 gggtctattaagccctaaaa-aaattgtttagttttttgaatcagatttgatgtttatatatatttattagtcaggatccaaatt 42312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 41668978 - 41668883
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgc 169  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  41668978 aggggtctattaggccctaaaa-aaattgcttagttttttgtatcaagtttgatgtttatatatatttattagttaggacccaaattataggttcgc 41668883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 7372618 - 7372711
Alignment:
Q  75 gggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgc 169  Q
    |||| |||||| |||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| || ||||||| ||| |||||    
T  7372618 gggtatattaggccctaaaa-aaattgcttagttttttgtatcaaatttgatgtttatatatatttattagttaagatccaaattgtaggttcgc 7372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 21124584 - 21124618
Alignment:
Q  114 tatcaagtttgatgttaatatatatttattagtta 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  21124584 tatcaagtttgatgtttatatatatttattagtta 21124618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 21144674 - 21144708
Alignment:
Q  114 tatcaagtttgatgttaatatatatttattagtta 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  21144674 tatcaagtttgatgtttatatatatttattagtta 21144708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 19936233 - 19936353
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    |||||| |||||| |||||||| ||||| ||| ||| ||| ||||||||||||| || ||  |  ||||||||||| |||||||||| ||| ||||   |    
T  19936233 aggggtttattaggccctaaaaaaaatttctttgtttttt-tatcaagtttgatatttattcaagtttattagttaggacccaaattgtaggttcgtcct 19936331  T
Q  173 ggaccaccaaactctcataaac 194  Q
     |||||||||| ||||| ||||    
T  19936332 agaccaccaaaatctcagaaac 19936353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 4350011 - 4349926
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    ||||||| ||||| || ||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  4350011 aggggtcaattaggccttaaaa-aaattgcttaattctttgtatcaagtttgatgtttatatatatttactagttatgacccaaatt 4349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 4350227 - 4350165
Alignment:
Q  97 aattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  4350227 aattgcttaattctttgtatcaagtttgatgtttatatatatttactagttatgacccaaatt 4350165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 14333915 - 14333980
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatat 138  Q
    ||||||||||||| |||||||| || ||| |||||| |||||||||||||||||||| ||||||||    
T  14333915 aggggtctattaggccctaaaaaaagttgattagttttttgtatcaagtttgatgtttatatatat 14333980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 7271594 - 7271649
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgtt 129  Q
    ||||||||||||| || ||||| || ||||||| || ||||||||||||||||||||    
T  7271594 aggggtctattagaccgtaaaa-aagttgcttaattttttgtatcaagtttgatgtt 7271649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 14902389 - 14902281
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    ||||||||||||| |||||| | ||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||| ||  ||||| ||    
T  14902389 aggggtctattagaccctaaca-aaattgcttagtt-tttgtatcaaatttgatgtttatatatatttattagttaggacccaaattgtatgttcgccat 14902292  T
Q  173 ggaccaccaaa 183  Q
     ||||||||||    
T  14902291 agaccaccaaa 14902281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 9373131 - 9373050
Alignment:
Q  75 gggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    ||||||||||| || ||||| || ||| |||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  9373131 gggtctattagacc-taaaaaaagttgtttagttttttgtatcaagtttgatgtt--tatatatttattagttatgacctaaatt 9373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 40212268 - 40212389
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    |||||| |||||| |||||||| ||||   | | || |||||||||| |||||||||  ||||  ||||||||||||||||||||||||||||| ||  |    
T  40212268 aggggtttattagaccctaaaaaaaatccttaatttttttgtatcaactttgatgtttgtataagtttattagttatgacccaaattatagatttgctct 40212367  T
Q  173 ggaccaccaaactctcataaac 194  Q
     |||||| ||| ||||||||||    
T  40212368 agaccactaaaatctcataaac 40212389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 24026674 - 24026789
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    ||||||||||||| |||||||| ||||| ||||| | ||| |||||| ||| ||||| |||||||||||||||||| || | ||||| ||| |||||  |    
T  24026674 aggggtctattaggccctaaaa-aaattacttagctttttatatcaaatttaatgtttatatatatttattagttaagatctaaattgtaggttcgccct 24026772  T
Q  173 ggaccaccaaactctca 189  Q
     |||||||||| |||||    
T  24026773 agaccaccaaaatctca 24026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 6582403 - 6582467
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatat 138  Q
    |||||||||||||  ||||||| |||||||||||||||||| || |||||||||||| ||||||||    
T  6582403 aggggtctattaggtcctaaaaaaaattgcttagttctttgcat-aagtttgatgtttatatatat 6582467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 35664502 - 35664623
Alignment:
Q  74 ggggtctattagtccctaaaacaaattgcttagttctttgt-atcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    |||||||||||| |||||||| |||||| || ||| ||| | |||||||||||| || |||||  ||||||||||| || ||||| | ||| |||||  |    
T  35664502 ggggtctattaggccctaaaaaaaattgttttgtttttttttatcaagtttgatatttatataggtttattagttaggatccaaaatgtaggttcgccct 35664601  T
Q  173 ggaccaccaaactctcataaac 194  Q
     |||||||||| ||||| ||||    
T  35664602 agaccaccaaaatctcaaaaac 35664623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 36184452 - 36184396
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgtt 129  Q
    ||||||||||||  |||||||| || |||||||||  ||||||||||||||||||||    
T  36184452 aggggtctattaaaccctaaaaaaagttgcttagtattttgtatcaagtttgatgtt 36184396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 2393798 - 2393895
Alignment:
Q  33 ccaaaaaattagtacgaaatttgggctccaannnnnnnnnaggggtctattagtccctaaaacaaattgcttag-ttctttgtatcaagtttgatgtt 129  Q
    ||||||||| |||||||||||||||| || |         ||||||||||||| |||||||| || |||||||| || |||||| |||||||||||||    
T  2393798 ccaaaaaataagtacgaaatttgggcccccaattttttttaggggtctattaggccctaaaaaaagttgcttagtttttttgtagcaagtttgatgtt 2393895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 27746733 - 27746641
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattc 167  Q
    ||||||||||||| |||||||| ||| | ||||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||||||||||    
T  27746733 aggggtctattagaccctaaaaaaaaat-cttagttctttgtatca-gtttgatgtttatatatatttattagttagcactcaaattatagattc 27746641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 20246784 - 20246663
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    |||||||||||||  | ||||| |||||||||  || ||| |||||| ||||||||| |||||| |||||||||||||||| ||||||||| ||| | ||    
T  20246784 aggggtctattagatcttaaaaaaaattgctttattttttatatcaaatttgatgtttatatatgtttattagttatgacctaaattataggttcaccat 20246685  T
Q  173 ggaccaccaaactctcataaac 194  Q
     | |||||||| ||||||||||    
T  20246684 aggccaccaaaatctcataaac 20246663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 37808154 - 37808033
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    |||| ||||||||  ||||||| ||||||||||||| ||| ||| |||||| ||||| |||||||||||||||||| |||| |||||||||  ||||  |    
T  37808154 agggttctattaggtcctaaaaaaaattgcttagttttttatatgaagttttatgtttatatatatttattagttaggacctaaattataggctcgccct 37808055  T
Q  173 ggaccaccaaactctcataaac 194  Q
      ||||||||| ||||||||||    
T  37808054 aaaccaccaaaatctcataaac 37808033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 30275373 - 30275306
Alignment:
Q  102 cttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgc 169  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||  | ||||||| |||||||||    
T  30275373 cttagttttttgtatcaagtttgatgtttatatatatttattagttagaatccaaattgtagattcgc 30275306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 36683997 - 36683941
Alignment:
Q  103 ttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    |||||| ||||||||||||||||| || ||||| |||||||||||| ||||||||||    
T  36683997 ttagttttttgtatcaagtttgatatttatataaatttattagttaggacccaaatt 36683941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 26772650 - 26772607
Alignment:
Q  121 tttgatgttaatatatatttattagttatgacccaaattataga 164  Q
    ||||||||| |||||||||||||||||| |||||||||||||||    
T  26772650 tttgatgtttatatatatttattagttaagacccaaattataga 26772607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 10066531 - 10066573
Alignment:
Q  87 ccctaaaacaaattgcttagttctttgtatcaagtttgatgtt 129  Q
    |||||||| || |||||||||| ||||||||||||||||||||    
T  10066531 ccctaaaaaaagttgcttagttttttgtatcaagtttgatgtt 10066573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 3412206 - 3412157
Alignment:
Q  110 tttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    ||||||||| |||||||||| ||||||||||||| ||||  |||||||||    
T  3412206 tttgtatcaggtttgatgtttatatatatttatttgttagaacccaaatt 3412157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 9107185 - 9107100
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaat 158  Q
    ||||||||||||| |||||||| || ||| |||||| |||||||| | ||||||||| ||||||||||||||||||||| ||||||    
T  9107185 aggggtctattagaccctaaaaaaagttgtttagttttttgtatcgaatttgatgtttatatatatttattagttatgatccaaat 9107100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 43790646 - 43790709
Alignment:
Q  96 aaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    |||||| |||||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  43790646 aaattgtttagttttttgtatcaaatttgatgtttatatatatttattagttaggacccaaatt 43790709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 24481416 - 24481356
Alignment:
Q  87 ccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagtta 148  Q
    |||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||    
T  24481416 ccctaaaa-aaattgcttagttttttttatcaagtttgatgtttatatatatttactagtta 24481356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 1543324 - 1543206
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcgcgat 172  Q
    ||||||||||||  || ||||| ||||||||||||| |||  ||||| ||| |||||  ||||||||||||||||| ||  |||||| ||| |||||  |    
T  1543324 aggggtctattaagccataaaa-aaattgcttagtttttt--atcaaatttaatgtttttatatatttattagttaggattcaaattgtaggttcgcttt 1543228  T
Q  173 ggaccaccaaactctcataaac 194  Q
     ||||| |||| ||||||||||    
T  1543227 agaccatcaaaatctcataaac 1543206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 39328370 - 39328402
Alignment:
Q  96 aaattgcttagttctttgtatcaagtttgatgt 128  Q
    ||||||||||||| |||||||||||||||||||    
T  39328370 aaattgcttagttttttgtatcaagtttgatgt 39328402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 154621 - 154706
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatatatttattagttatgacccaaatt 159  Q
    |||| |||||||| |||||||| |||||| |||||| |||| |||| |||||||| | |||||||||||||||||| || |||||||    
T  154621 agggatctattagaccctaaaa-aaattgtttagttttttgaatcaggtttgatgattatatatatttattagttaggatccaaatt 154706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 32236990 - 32237044
Alignment:
Q  114 tatcaagtttgatgttaatatatatttattagttatgacccaaattatagattcg 168  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||    
T  32236990 tatcaagtttgatgtttatatatatttattagttaggacccaaattgtaggttcg 32237044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 40568900 - 40568956
Alignment:
Q  73 aggggtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgtt 129  Q
    ||||||||||||| || ||||| || |||||||||| |||||||||| |||||||||    
T  40568900 aggggtctattagaccttaaaaaaagttgcttagttttttgtatcaaatttgatgtt 40568956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 6419597 - 6419545
Alignment:
Q  96 aaattgcttagttctttgtatcaagtttgatgttaatatatatttattagtta 148  Q
    ||||| ||||| | ||| |||||||||||||||| ||||||||||||||||||    
T  6419597 aaattacttagatttttatatcaagtttgatgtttatatatatttattagtta 6419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 36295986 - 36296045
Alignment:
Q  77 gtctattagtccctaaaacaaattgcttagttctttgtatcaagtttgatgttaatatata 137  Q
    |||||||||  ||||||| ||||| ||||||| |||||||||||||||||||| |||||||    
T  36295986 gtctattaggtcctaaaa-aaattacttagttttttgtatcaagtttgatgtttatatata 36296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 43007750 - 43007802
Alignment:
Q  96 aaattgcttagttctttgtatcaagtttgatgttaatatatatttattagtta 148  Q
    ||||||||||||| ||||||||||  |||||||| ||||||| ||||||||||    
T  43007750 aaattgcttagttttttgtatcaaacttgatgtttatatataattattagtta 43007802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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