View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_high_6 (Length: 249)
Name: NF20292_high_6
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 48074512 - 48074307
Alignment:
| Q |
20 |
cttaactggagtcagaatattaaggttggggacactagtgagtggttttgattttaattaatcaagtgtatnnnnnnnn------tatgagacctgttgc |
113 |
Q |
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| T |
48074512 |
cttaactggagtcagaatattaaggttggggacactagtgagtggttttgattttaattaatcaagtgtataaaaaaaaaaaatatatgagacctgttgc |
48074413 |
T |
|
| Q |
114 |
tgtactcattacaagagtattagctataataagctactatgaagtatagctagcagttacatatgcatatatcttcatctttgttgatgcaacttagttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48074412 |
tgtactcattacaagagtattagctataataagctactatgaagtatagctagcagttacatatgcatatatcttcatctttgttgatgcaacttagttt |
48074313 |
T |
|
| Q |
214 |
ttcatt |
219 |
Q |
| |
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| |||| |
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| T |
48074312 |
tacatt |
48074307 |
T |
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