View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_1 (Length: 521)
Name: NF20292_low_1
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 41895887 - 41896390
Alignment:
| Q |
1 |
acctatgcaaattgcaacctgaaatgaaagaaacgtaaannnnnnnnnnnnaatgacaaatataagagaaacatatattatattctgattttagattgtt |
100 |
Q |
| |
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| T |
41895887 |
acctatgcaaattgcaacctgaaatgaaagaaacgtaaatttttattttttaatgacaaatataagagaaacatatattatattctgattttagattgtt |
41895986 |
T |
|
| Q |
101 |
acattttttaaagaaaaattgctaatgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacatt |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41895987 |
acattttttaaagaaaaattgctaacgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacatt |
41896086 |
T |
|
| Q |
201 |
atactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaa |
300 |
Q |
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| T |
41896087 |
atactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaa |
41896186 |
T |
|
| Q |
301 |
ttgagaggacaagagtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896187 |
ttgagaggacaagagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaa |
41896286 |
T |
|
| Q |
401 |
ataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatgaagaaattaaataatacttctataacttactctactactgaa |
500 |
Q |
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| T |
41896287 |
ataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatgaagaaattaaataatacttctataacttactctactactgaa |
41896386 |
T |
|
| Q |
501 |
aatt |
504 |
Q |
| |
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|||| |
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| T |
41896387 |
aatt |
41896390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 136 - 433
Target Start/End: Original strand, 41890420 - 41890707
Alignment:
| Q |
136 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
235 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |
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| T |
41890420 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
41890519 |
T |
|
| Q |
236 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgatgt |
335 |
Q |
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| T |
41890520 |
ttgactttttagtttcagaatcaattcattttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
41890609 |
T |
|
| Q |
336 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaaa |
433 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |||||||||||||||||||| | |||||||| |
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| T |
41890610 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgtaaaagctgaaacgtttcaacaaa |
41890707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 314 - 432
Target Start/End: Complemental strand, 22551979 - 22551861
Alignment:
| Q |
314 |
agtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaa |
413 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| |
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| T |
22551979 |
agtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaa |
22551880 |
T |
|
| Q |
414 |
agctgaaacatatcaacaa |
432 |
Q |
| |
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||||| |||| || ||||| |
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| T |
22551879 |
agctgcaacaaattaacaa |
22551861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
139 |
ttacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataatt |
222 |
Q |
| |
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|||||||||| |||||||| ||||| || |||||| |||| ||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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