View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_10 (Length: 279)
Name: NF20292_low_10
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 21240171 - 21240442
Alignment:
| Q |
1 |
tctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
100 |
Q |
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| T |
21240171 |
tctggataatgctgaggatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
21240270 |
T |
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| Q |
101 |
ttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaagtctacacatatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21240271 |
ttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagaagttacactcgtaaagtctacacatatgatg |
21240370 |
T |
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| Q |
201 |
gcttgtacaaggttgacaaatattgggcagagaagggattgtctggcttcagagtatacaagtttcatctca |
272 |
Q |
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| T |
21240371 |
gattgtacaaggttgacaaatattgggcagaaaagggattgtctggcttcacagtatacaagtttcgtctca |
21240442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 21288537 - 21288272
Alignment:
| Q |
1 |
tctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
100 |
Q |
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| T |
21288537 |
tctggataatgctgaagatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
21288438 |
T |
|
| Q |
101 |
ttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaagtctacacatatgatg |
200 |
Q |
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| T |
21288437 |
ttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagtagttacactcgtaaagtctacacatatgatg |
21288338 |
T |
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| Q |
201 |
gcttgtacaaggttgacaaatattgggcagagaagggattgtctggcttcagagtatacaagtttc |
266 |
Q |
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| T |
21288337 |
gtttgtacaaggttgacaaatgttgggcagagaagggattgtctggcttcacagtatacaagtttc |
21288272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 32424118 - 32424007
Alignment:
| Q |
1 |
tctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32424118 |
tctggataatgctgaggatgttgtgtacactggtcaaggtgggcataatttgaccggtaataagcgtcaaattcaagatcaaaagttggagcggggtaat |
32424019 |
T |
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| Q |
101 |
ttagcactcaag |
112 |
Q |
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|||||||||||| |
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| T |
32424018 |
ttagcactcaag |
32424007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 32422608 - 32422526
Alignment:
| Q |
131 |
gtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaagtctacacatatgatggcttgtacaaggt |
213 |
Q |
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||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32422608 |
gtgccagtaagggtgattcgaggtcatgactcacgtagcagttacactcgtaaagtctatacatatgatggcttgtacaaggt |
32422526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 32422090 - 32422039
Alignment:
| Q |
221 |
tattgggcagagaagggattgtctggcttcagagtatacaagtttcatctca |
272 |
Q |
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|||||||||||||||||| | |||||||||| |||||||||||||| ||||| |
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| T |
32422090 |
tattgggcagagaagggaatatctggcttcacagtatacaagtttcgtctca |
32422039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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