View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_14 (Length: 248)
Name: NF20292_low_14
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 43813900 - 43813824
Alignment:
| Q |
103 |
cactattttgctttacaaattgtgaaagcagtagactaattttgaaatacgtatttataactttaaatgttattact |
179 |
Q |
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| T |
43813900 |
cactattttgctttacaaattgtgaaagcagtagactaattttgaaatacgtatttataactttaaatgttattact |
43813824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43814002 - 43813962
Alignment:
| Q |
1 |
atgtatgtaatacctattgatcataatagcttaattaatgg |
41 |
Q |
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| T |
43814002 |
atgtatgtaatacctattgaccataatagcttaattaatgg |
43813962 |
T |
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