View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_15 (Length: 242)
Name: NF20292_low_15
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 35798728 - 35798515
Alignment:
| Q |
16 |
atcacaagaagcaacaaaagcatataaaggaacaacaaagtaatatagaagcaatattagcaacaatggagaattcgatgaaacacatggaagaaactaa |
115 |
Q |
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| T |
35798728 |
atcacaagaagcaacaaaagcatataaaggaacaacaaagtaatatagaagcaatattagcaacaatggagaattcgatgaaacacatggaagaaactaa |
35798629 |
T |
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| Q |
116 |
gtatgaacaagttggtacatgcagccaaaataggtggcaaaagaagaccaaatgcttagggttagggggtccaaagaggaagaaatgtcatgattcaatt |
215 |
Q |
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| T |
35798628 |
gtatgaacaagttggtaaatgcagccaaaataggtggcaaaaaaagaccaaatgcttagggttagggggtccaaagaggaagaaatgtcaggattcaatt |
35798529 |
T |
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| Q |
216 |
gcctactttggaag |
229 |
Q |
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|||||||||||||| |
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| T |
35798528 |
gcctactttggaag |
35798515 |
T |
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