View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_16 (Length: 237)
Name: NF20292_low_16
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 4698037 - 4697835
Alignment:
| Q |
19 |
actcacacatacacacgtttattttaaagaatataaatcttatcagtttttatacattcttctgtatactgaaaataagttttcttctgtttaattactt |
118 |
Q |
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| T |
4698037 |
actcacacatatacacgtttattttaaagaatataaatcttatcagtttttatacattcttctgtatactgaaaataagttttcttctgtttaattactt |
4697938 |
T |
|
| Q |
119 |
tttctaaattaatgatgatatcatcaatagtattatattatttgtccagtctgatttaatttaatttgcttataaacaaaacaaccaaataaaacaagtc |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4697937 |
tttctaaattaacgatgatatcatcaatagtattatattatttgtccagtctgatttaatttaatttgcttataaacaaaacaaccaaataaaacaagtc |
4697838 |
T |
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| Q |
219 |
aca |
221 |
Q |
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||| |
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| T |
4697837 |
aca |
4697835 |
T |
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