View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_2 (Length: 458)
Name: NF20292_low_2
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 3 - 441
Target Start/End: Original strand, 21773705 - 21774143
Alignment:
| Q |
3 |
ggcattgttgatatgtacgcgaaatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttga |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21773705 |
ggcattgttgatatgtacgcgaaatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttga |
21773804 |
T |
|
| Q |
103 |
ttgttgggtataatcaacacggtcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21773805 |
ttgttgggtataatcaacacggtcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgag |
21773904 |
T |
|
| Q |
203 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatctgttgttgcttcgcag |
302 |
Q |
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| T |
21773905 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtatggtttggaatctgttgttgcttcgcaa |
21774004 |
T |
|
| Q |
303 |
acttcgcttcttactatgtattcaaaatgcaacatggttgaggattccataaaggtatttaatagccttgcttatgcaagccatgtgacttggacatctt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21774005 |
acttcgcttcttactatgtattcaaaatgcaacatggttgaggattccataaaggtatttaatagccttgcttatgcaagccatgtgacttggacatctt |
21774104 |
T |
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| Q |
403 |
ttatagttggtcttgtgcagaatggtagagaggaggttg |
441 |
Q |
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| T |
21774105 |
ttatagttggtcttgtgcagaatggtagagaggaggttg |
21774143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 3 - 437
Target Start/End: Complemental strand, 13515196 - 13514762
Alignment:
| Q |
3 |
ggcattgttgatatgtacgcgaaatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttga |
102 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13515196 |
ggcattgttgatatgtatgcgaaatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttga |
13515097 |
T |
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| Q |
103 |
ttgttgggtataatcaacacggtcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgag |
202 |
Q |
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| T |
13515096 |
ttgttgggtataatcaacgcggtcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgag |
13514997 |
T |
|
| Q |
203 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatctgttgttgcttcgcag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514996 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatctgttgttgcttcgcag |
13514897 |
T |
|
| Q |
303 |
acttcgcttcttactatgtattcaaaatgcaacatggttgaggattccataaaggtatttaatagccttgcttatgcaagccatgtgacttggacatctt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514896 |
acttcgcttcttactatgtattcaaaatgcaacatggttgaggattccataaaggtatttaatagccttgcttatgcaagccatgtgacttggacatctt |
13514797 |
T |
|
| Q |
403 |
ttatagttggtcttgtgcagaatggtagagaggag |
437 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
13514796 |
ttatagttggtcttgtgcagaatggtagagaggag |
13514762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 3 - 441
Target Start/End: Complemental strand, 13562097 - 13561659
Alignment:
| Q |
3 |
ggcattgttgatatgtacgcgaaatttggtaaaatgaaggatgcccgttttgtgtttgaccgtgttttggataaagacgttgtcttgttcactgcgttga |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
13562097 |
ggcattgttgatatgtatacgaaatttggtaaaatgaaggatgcccaatttgtgtttgaccgtgttttggataaagatgttgtcttattcactgcattga |
13561998 |
T |
|
| Q |
103 |
ttgttgggtataatcaacacggtcttgatggtgaagctttggaggtttttgaagatatggtcggtagtagaattaagccgaatgaatatactttggcgag |
202 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||| ||| ||||||| |||||||||||||| || || |
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| T |
13561997 |
ttgttgggtataatcagcatggtcttgatggtgaagctttagaggtttttgaggaaatggttggtaggagagttaagcctaatgaatatactttagcaag |
13561898 |
T |
|
| Q |
203 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaattgattcatggtcttgttgttaagtctggtttggaatctgttgttgcttcgcag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13561897 |
tgttttggttagttgtggtaatctaggagatttagttaatggtaaactgattcatggtcttgttgttaagtctggtttggaatctgttattgcttcgcag |
13561798 |
T |
|
| Q |
303 |
acttcgcttcttactatgtattcaaaatgcaacatggttgaggattccataaaggtatttaatagccttgcttatgcaagccatgtgacttggacatctt |
402 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
13561797 |
acttcgcttcttactatgtattcaaaatgcagcatggttgaggattccataaaggtgtttaatcaactttcttatgcaagccatgtgacttgcacatctt |
13561698 |
T |
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| Q |
403 |
ttatagttggtcttgtgcagaatggtagagaggaggttg |
441 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
13561697 |
ttatagttggtcttgtgcagaatggtagagaggaggttg |
13561659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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