View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_5 (Length: 372)
Name: NF20292_low_5
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 45179589 - 45179234
Alignment:
| Q |
19 |
tttaatatgtaattacttccatgggttcacagacgaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgca |
118 |
Q |
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| T |
45179589 |
tttaatatgtaattacttccatgggttcacagaagaggttggcaacatgcctttgaaacattttctctgatattgtgagtcaaatgcattgagtattgca |
45179490 |
T |
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| Q |
119 |
atttcactttatgtaattactgagttcatatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagag--acctccagggtat |
216 |
Q |
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| T |
45179489 |
atttcactttatgtaattaccgagttcatatttccaagaatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacacctccagggtat |
45179390 |
T |
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| Q |
217 |
aatgtgacagatgctaaaacgtcaggcgtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgccagcattagtgct |
316 |
Q |
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| T |
45179389 |
aatgtgacagatgctaaaacgtcaggcgtgcaaattaaatggactctcgaagccaaactacattccacacagcttattgaagagtgccagctaatgtgct |
45179290 |
T |
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| Q |
317 |
tcaaagagtatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttctt |
372 |
Q |
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| T |
45179289 |
tcaaagagtatagaagtgaaaagaagtaaagatccagtgtcaagtgagtagttctt |
45179234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 157 - 353
Target Start/End: Complemental strand, 45172630 - 45172438
Alignment:
| Q |
157 |
aatgaaaataacgatattgaaatgctgactggatcaaatcttcagagacctccagggtataatgtgacagatgctaaaacgtcaggcgtgcaaattaaat |
256 |
Q |
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| T |
45172630 |
aatgaaaacaacgatattgaaatgccaactggatcagatcttcagagccctccaggttctaatgtgacagatgctgaaaactcaggcgctca----aaat |
45172535 |
T |
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| Q |
257 |
ggactctcgaagccaaactacattccacacagcttattgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagatccag |
353 |
Q |
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| T |
45172534 |
ggactcgcaaagccaaactacagtccacgtagcttgttgaagagtgccagcattagtgcttcaaagtgtatagatgtgaaaggaagtaaagatccag |
45172438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 29958484 - 29958426
Alignment:
| Q |
293 |
ttgaagagtgccagcattagtgcttcaaagagtatagaagtgaaaagaagtaaagatcc |
351 |
Q |
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| T |
29958484 |
ttgaagagtgccagcattagtggttcaaaatgtatagatgtcaaaaaaagtaaagatcc |
29958426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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