View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20292_low_8 (Length: 284)
Name: NF20292_low_8
Description: NF20292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20292_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 41043382 - 41043120
Alignment:
| Q |
1 |
taaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaagaacaa |
100 |
Q |
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| T |
41043382 |
taaaaagcaaatgccaaagggaaaaaaattaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaagaacaa |
41043283 |
T |
|
| Q |
101 |
aacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttcaataatctaaccc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043282 |
aacaagaacttgacattctcaggattaatttcgatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttcaataatctaaccc |
41043183 |
T |
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| Q |
201 |
tgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043182 |
tgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtc |
41043120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28087041 - 28087306
Alignment:
| Q |
1 |
taaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaagaacaa |
100 |
Q |
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||||||||||||||||||||| ||| | || || || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || |
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| T |
28087041 |
taaaaagcaaatgccaaagggaaaaaatttacatacgcaaagtcaaattttaagatatgcttatggtcagattgagaaggagaaagctcaacaagagaaa |
28087140 |
T |
|
| Q |
101 |
aacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaag---taaacacaagacctcctattgaggtagctttcaataatctaa |
197 |
Q |
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||||| |||||||| ||||||||| | |||||||||||| ||||| |||||| | | || | || ||| || |||||||||||||| || ||| |
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| T |
28087141 |
aacaataacttgaccttctcaggagtgatttcaatggcttctgaagttgaggaggatattaaatcgaggcctgagatcgaggtagctttcaaagatgtaa |
28087240 |
T |
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| Q |
198 |
ccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtc |
263 |
Q |
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|||| || ||||| || |||| |||||||||||||||||||||| |||||||||||||| |||| |
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| T |
28087241 |
cccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtc |
28087306 |
T |
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