View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20293_low_1 (Length: 709)
Name: NF20293_low_1
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20293_low_1 |
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| [»] scaffold0265 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 51 - 696
Target Start/End: Original strand, 20041334 - 20041979
Alignment:
| Q |
51 |
ttttttaaggtggccgttttaattaaacatttttgtgtcatggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaaga |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041334 |
ttttttaaggtggccgttttaattaaacatttttgtgtcatggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaaga |
20041433 |
T |
|
| Q |
151 |
aagctgatccttattattcatcttctgaagaatcttctgatgaagatgaggtattagatattttgaagtttatcgcatggtgatagtgtccttaatttta |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20041434 |
aagctgatccttattattcatcttctgaagaatcttttgatgaagatgaggtattagatattttgaagtttattgcatggtgatagtgtccttaatttta |
20041533 |
T |
|
| Q |
251 |
tatcattgcatttaccggttttataaaattccctttttaattaaacttttttgtttcatggtttagaaacctgctgcagaggttgttccttccaaaatag |
350 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041534 |
tatcattccatttaccggttttataaaattccctttttaattaaacttttttgtttcatggtttagaaacctgctgcagaggttgttccttccaaaatag |
20041633 |
T |
|
| Q |
351 |
ggagtgcacccgcaaagaaggctgatagttctgacttagaatctgacgaatcttctgatgaagatgaggtgagttcaacctttcatatcagccgtattgt |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20041634 |
ggagtgcacccgcaaagaaggctgatagttctgacttagaatctgacgaatcttctgatgaagatgaggtgagttcaacctttcatatcagccatattgt |
20041733 |
T |
|
| Q |
451 |
aaccttctaactcttagttggtgttttgtgatgcctcaacattccaatatctgtcctacattcattcgcgagggtacccctaatgggttgaagaccatat |
550 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
20041734 |
aaccttctaactcttagttggtgttttgtgatgcctcaacattccaatatctgtcctacattcatccgtgagggtacccctaatgggttgaagaccatat |
20041833 |
T |
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| Q |
551 |
caacgggtcttccataggtatatcaacgggtttattgtatgatgatgataataccattgtggttgcaacttcttgttgtgtattttaatacgcactctta |
650 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041834 |
caacgggtcttccataggtatatcaactggtttattgtatgatgatgataataccactgtggttgcaacttcttgttgtgtattttaatacgcactctta |
20041933 |
T |
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| Q |
651 |
tttagttatttaaaaacattgtgattgcaacttctaataccctatg |
696 |
Q |
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| T |
20041934 |
tttagttatttaaaaacattgtgattgcaacttctaataccctatg |
20041979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 488 - 565
Target Start/End: Original strand, 18153302 - 18153379
Alignment:
| Q |
488 |
aacattccaatatctgtcctacattcattcgcgagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
565 |
Q |
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| T |
18153302 |
aacattccaatatctgtcctacattcattcgtgagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
18153379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 235
Target Start/End: Complemental strand, 28565768 - 28565641
Alignment:
| Q |
111 |
aaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgatccttattattcatc---ttctgaagaatcttctgatgaagatgaggtattag |
207 |
Q |
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|||| |||||||||||||||||| |||||||||| |||||||| |||| ||| | | | |||||||||||||||||||||||| ||||| ||| |
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| T |
28565768 |
aaagctgttccatctaaaaatgggagtgcacctgcaaagaaagttgatacttctgaagaagaagattctgaagaatcttctgatgaagacaaggtaatag |
28565669 |
T |
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| Q |
208 |
atattttgaagtttatcgcatggtgata |
235 |
Q |
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| T |
28565668 |
acattttgaagtttattgcatgatgata |
28565641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 28565528 - 28565417
Alignment:
| Q |
90 |
atggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgatccttattattcatcttctgaagaatcttctg |
189 |
Q |
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|||||| |||| |||||| | |||| |||||||||||||||||| |||||||| | ||||||||||| | || || | | | |||| |||||||||| |
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| T |
28565528 |
atggttcagaaacctgcagctaaagctgttccatctaaaaatgggagtgcacccgcaaagaaagctgcttctgatgaagaagatactgatgaatcttctg |
28565429 |
T |
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| Q |
190 |
atgaagatgagg |
201 |
Q |
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|||||||||||| |
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| T |
28565428 |
atgaagatgagg |
28565417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 28565295 - 28565222
Alignment:
| Q |
304 |
tttcatggtttagaaacctgctgcagaggttgttccttccaaaatagggagtgcacccgcaaagaaggctgata |
377 |
Q |
| |
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|||||| ||| |||||||||||||| | | |||||||||||| | ||||||| |||||||||||| ||||||| |
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| T |
28565295 |
tttcattgttcagaaacctgctgcaaaagctgttccttccaagaatgggagtgtacccgcaaagaaagctgata |
28565222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 488 - 565
Target Start/End: Original strand, 31396863 - 31396940
Alignment:
| Q |
488 |
aacattccaatatctgtcctacattcattcgcgagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
565 |
Q |
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|||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
31396863 |
aacattgcaatatttgtcctacattcatttgcgagggtacccctaatgggttgaagaccatatcaatggttcttccat |
31396940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 6561 - 6606
Alignment:
| Q |
520 |
gagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
565 |
Q |
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| T |
6561 |
gagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
6606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 21826223 - 21826178
Alignment:
| Q |
520 |
gagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
565 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21826223 |
gagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
21826178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 496 - 565
Target Start/End: Complemental strand, 222398 - 222329
Alignment:
| Q |
496 |
aatatctgtcctacattcattcgcgagggtacccctaatgggttgaagaccatatcaacgggtcttccat |
565 |
Q |
| |
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||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||||||||||| |||||| |
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| T |
222398 |
aatatttgtcccacattcattcgggagggtactcctaagggattgaagaccatatcaacgggtgttccat |
222329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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