View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20293_low_2 (Length: 684)
Name: NF20293_low_2
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20293_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 294 - 668
Target Start/End: Original strand, 33080286 - 33080659
Alignment:
| Q |
294 |
gcatgacatagtcttcggtatatatctctttgtatagacaaactagtttgccaattattcataaat----gtgtcaaagacattaatgaaagaatatact |
389 |
Q |
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| T |
33080286 |
gcatgacaaagccttcagtttatatctctttgtataga---actagtttgccaattattcataaataatcgtgtcaaaggcattaaagaaacaatatact |
33080382 |
T |
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| Q |
390 |
ataactgtaattgaagt----gttaaacactaaactgtaaaccctgatcatgtgggagacgttaaagaaatagctggttaaatttccatgtaataaagaa |
485 |
Q |
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| T |
33080383 |
ataactgcaattgaagttttaattaaacactaaaccgtaaaccctaatcatgtgggagacgttaaa-aaatagctggttaaatttccatgtaataaagaa |
33080481 |
T |
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| Q |
486 |
ggaagtaatatagctgcaattgaaagaatatataactgcaattgaaatgttaattacgtaggagacattaaagaaagaatatagaaatagaacgctaatt |
585 |
Q |
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| T |
33080482 |
tgaagtaacatagctgcaattgaaagaatatataactgcaattgaagtgataattatgtatgagacattaaagaaagaat------atatgacgctaatt |
33080575 |
T |
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| Q |
586 |
gaagtgttaatttgt-ggtaatcatgctagagacattaaagaaataaagatgggaaatttgcttatgataaggaactgagtaat |
668 |
Q |
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| T |
33080576 |
gaagtgttaatttgtgggcaatcatgcctgagacattaaagaaatatatttgtgaaattttcttatgataatgaactgagtaat |
33080659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 33078811 - 33078875
Alignment:
| Q |
111 |
gagatccagggaaactccagtgcgatctccctcaaaagcaacaatatattctattcattttttga |
175 |
Q |
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| T |
33078811 |
gagatctagggaaactccagtgcgatctccctcaaaagcaacaatatattctatttattttttga |
33078875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 489 - 536
Target Start/End: Original strand, 33095201 - 33095248
Alignment:
| Q |
489 |
agtaatatagctgcaattgaaagaatatataactgcaattgaaatgtt |
536 |
Q |
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| T |
33095201 |
agtaatatagctgcaattgaaagaatatataactgcaattgaagtgtt |
33095248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 628
Target Start/End: Original strand, 33080671 - 33080717
Alignment:
| Q |
582 |
aattgaagtgttaatttgtggtaatcatgctagagacattaaagaaa |
628 |
Q |
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| T |
33080671 |
aattgaagtgttaatttgttgtaatcatgttggagacattaaagaaa |
33080717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 33078725 - 33078792
Alignment:
| Q |
22 |
tcagtgttgtaatttgtggtagaggaattaatatacaaaaacaaaagcataaccagagaagatcacacaca |
92 |
Q |
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| T |
33078725 |
tcagtgttgtaatttgtggcagaggaat--ataca-aaaaatgaaagcataacgagagaagatcacacaca |
33078792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 6e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 316 - 540
Target Start/End: Original strand, 22764468 - 22764696
Alignment:
| Q |
316 |
tatctctttgtatagacaaactagtttgccaattattcataaat----gtgtcaaagacattaatgaaagaatatactataactgtaattgaagtgttaa |
411 |
Q |
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| T |
22764468 |
tatctctttgtatagacaaactagtttgccaattattcataaataattgtgtcgaagaaattaaagaaagaatatattataactgtaattgaagtgttaa |
22764567 |
T |
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| Q |
412 |
acactaaactgtaaaccctgatcatgtgggagacgttaaagaaatagctggttaaatttccatgtaataaagaaggaagtaatatagctgcaattgaaag |
511 |
Q |
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| T |
22764568 |
acactaaaccttaaaccctcatcatgtcagagacattaaagaaatagctggttaaatttccttgtaataaagaaggaagaaatatagctgcaattgaaag |
22764667 |
T |
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| Q |
512 |
aatatataactgcaattgaaatgttaatt |
540 |
Q |
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| T |
22764668 |
aatatataactgcaattgaagtgttaatt |
22764696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 630
Target Start/End: Original strand, 22764681 - 22764729
Alignment:
| Q |
582 |
aattgaagtgttaatttgtggtaatcatgctagagacattaaagaaata |
630 |
Q |
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| T |
22764681 |
aattgaagtgttaatttgtggaaatcatgcctgagacattaaagaaata |
22764729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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